Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   AAVC70_RS06175 Genome accession   NZ_CP154898
Coordinates   1001139..1001279 (-) Length   46 a.a.
NCBI ID   WP_013353398.1    Uniprot ID   P06532
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 996139..1006279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS06150 (AAVC70_06150) - 996220..998232 (-) 2013 Protein_1085 histidine kinase -
  AAVC70_RS06160 (AAVC70_06160) - 999592..999894 (-) 303 WP_345816382.1 hypothetical protein -
  AAVC70_RS06165 (AAVC70_06165) comX 999917..1000093 (-) 177 WP_013353396.1 competence pheromone ComX -
  AAVC70_RS06170 (AAVC70_06170) - 1000112..1000987 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  AAVC70_RS06175 (AAVC70_06175) degQ 1001139..1001279 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  AAVC70_RS06180 (AAVC70_06180) - 1001744..1002085 (+) 342 WP_013353399.1 hypothetical protein -
  AAVC70_RS06185 (AAVC70_06185) - 1002092..1003315 (-) 1224 WP_013353400.1 EAL and HDOD domain-containing protein -
  AAVC70_RS06190 (AAVC70_06190) - 1003445..1004911 (-) 1467 WP_014472199.1 nicotinate phosphoribosyltransferase -
  AAVC70_RS06195 (AAVC70_06195) - 1004929..1005480 (-) 552 WP_013353402.1 isochorismatase family cysteine hydrolase -
  AAVC70_RS06200 (AAVC70_06200) - 1005561..1005956 (-) 396 WP_013353403.1 DUF1694 domain-containing protein -
  AAVC70_RS06205 (AAVC70_06205) - 1006022..1006270 (-) 249 WP_013353404.1 YueH family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5532.37 Da        Isoelectric Point: 6.2567

>NTDB_id=994842 AAVC70_RS06175 WP_013353398.1 1001139..1001279(-) (degQ) [Bacillus amyloliquefaciens strain Fad 97]
MEKKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=994842 AAVC70_RS06175 WP_013353398.1 1001139..1001279(-) (degQ) [Bacillus amyloliquefaciens strain Fad 97]
GTGGAAAAGAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P06532

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

91.304

100

0.913

Multiple sequence alignment