Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVB98_RS20225 Genome accession   NZ_CP154895
Coordinates   3846595..3846966 (-) Length   123 a.a.
NCBI ID   WP_232469737.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3841595..3851966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS20190 (AAVB98_20190) - 3841604..3841957 (+) 354 WP_014470379.1 multidrug efflux SMR transporter -
  AAVB98_RS20195 (AAVB98_20195) - 3841971..3842423 (-) 453 WP_013352346.1 OsmC family protein -
  AAVB98_RS20200 (AAVB98_20200) - 3842483..3843190 (-) 708 WP_013352345.1 poly-gamma-glutamate hydrolase family protein -
  AAVB98_RS20205 (AAVB98_20205) - 3843445..3843678 (-) 234 WP_014471844.1 hypothetical protein -
  AAVB98_RS20210 (AAVB98_20210) - 3843862..3845190 (+) 1329 WP_013352344.1 S8 family peptidase -
  AAVB98_RS20215 (AAVB98_20215) - 3845383..3845745 (+) 363 WP_013352343.1 hypothetical protein -
  AAVB98_RS20220 (AAVB98_20220) - 3845780..3846511 (-) 732 WP_013352342.1 YoaK family protein -
  AAVB98_RS20225 (AAVB98_20225) nucA/comI 3846595..3846966 (-) 372 WP_232469737.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVB98_RS20230 (AAVB98_20230) - 3847319..3848530 (+) 1212 WP_013352340.1 cytochrome P450 -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13302.74 Da        Isoelectric Point: 5.5837

>NTDB_id=994815 AAVB98_RS20225 WP_232469737.1 3846595..3846966(-) (nucA/comI) [Bacillus amyloliquefaciens strain Fad 77]
MGAGIHSENTAEAASRYDHVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEERRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=994815 AAVB98_RS20225 WP_232469737.1 3846595..3846966(-) (nucA/comI) [Bacillus amyloliquefaciens strain Fad 77]
ATGGGCGCCGGCATCCATTCGGAGAATACTGCTGAAGCTGCATCCCGATATGATCATGTGCTGTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGGAATCATATAAAAGATGCCATTTCGGCAGGGCATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGAAAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCTGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACGGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCTTCGGATAATCGCGGAGCCGGTTCATGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGTACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.557

99.187

0.561

Multiple sequence alignment