Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVB98_RS18475 Genome accession   NZ_CP154895
Coordinates   3495471..3496079 (-) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3490471..3501079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS18455 (AAVB98_18455) dnaD 3490710..3491408 (+) 699 WP_013352649.1 DNA replication protein DnaD -
  AAVB98_RS18460 (AAVB98_18460) nth 3491427..3492086 (+) 660 WP_013352648.1 endonuclease III -
  AAVB98_RS18465 (AAVB98_18465) - 3492083..3492574 (+) 492 WP_013352647.1 YpoC family protein -
  AAVB98_RS18470 (AAVB98_18470) - 3492652..3495432 (-) 2781 WP_013352646.1 PBP1A family penicillin-binding protein -
  AAVB98_RS18475 (AAVB98_18475) recU 3495471..3496079 (-) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  AAVB98_RS18480 (AAVB98_18480) - 3496121..3497083 (+) 963 WP_013352644.1 DUF2515 domain-containing protein -
  AAVB98_RS18485 (AAVB98_18485) sspM 3497126..3497230 (-) 105 WP_013352643.1 acid-soluble spore protein SspM -
  AAVB98_RS18490 (AAVB98_18490) - 3497435..3497677 (+) 243 WP_013352642.1 DUF5446 family protein -
  AAVB98_RS18495 (AAVB98_18495) - 3497723..3498091 (+) 369 WP_013352641.1 YppE family protein -
  AAVB98_RS18500 (AAVB98_18500) - 3498130..3498312 (-) 183 WP_003153532.1 YppF family protein -
  AAVB98_RS18505 (AAVB98_18505) - 3498501..3498998 (+) 498 WP_061573792.1 YppG family protein -
  AAVB98_RS18510 (AAVB98_18510) - 3499028..3499441 (-) 414 WP_013352639.1 Hsp20/alpha crystallin family protein -
  AAVB98_RS18515 (AAVB98_18515) - 3499578..3500084 (+) 507 WP_013352638.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=994814 AAVB98_RS18475 WP_014470057.1 3495471..3496079(-) (recU) [Bacillus amyloliquefaciens strain Fad 77]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=994814 AAVB98_RS18475 WP_014470057.1 3495471..3496079(-) (recU) [Bacillus amyloliquefaciens strain Fad 77]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCTGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment