Detailed information NTG0994779

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AAVB98_RS10930
• Genome accession: NZ_CP154895
• Coordinates: 2081495..2082640 (-)
• Length: 381 a.a.
• NCBI ID: WP_013353955.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 77
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2076495..2087640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVB98_RS10905 (AAVB98_10905)	-	2076789..2077220 (+)	432	WP_013353959.1	hypothetical protein	-
AAVB98_RS10910 (AAVB98_10910)	-	2077245..2079317 (-)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
AAVB98_RS10915 (AAVB98_10915)	speE	2079517..2080347 (+)	831	WP_013353957.1	spermidine synthase	-
AAVB98_RS10920 (AAVB98_10920)	speB	2080406..2081278 (+)	873	WP_013353956.1	agmatinase	-
AAVB98_RS10925 (AAVB98_10925)	phrF	2081392..2081511 (-)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
AAVB98_RS10930 (AAVB98_10930)	rapF	2081495..2082640 (-)	1146	WP_013353955.1	tetratricopeptide repeat protein	Regulator
AAVB98_RS10935 (AAVB98_10935)	-	2082869..2084263 (+)	1395	WP_014471165.1	YncE family protein	-
AAVB98_RS10940 (AAVB98_10940)	-	2084269..2084728 (-)	460	Protein_2103	bacteriocin biosynthesis protein AlbG	-
AAVB98_RS10945 (AAVB98_10945)	-	2084882..2085310 (+)	429	WP_013353951.1	DUF1934 domain-containing protein	-
AAVB98_RS10950 (AAVB98_10950)	argS	2085307..2086977 (+)	1671	WP_013353950.1	arginine--tRNA ligase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45480.54 Da
• Isoelectric Point: 4.6393

>NTDB_id=994779 AAVB98_RS10930 WP_013353955.1 2081495..2082640(-) (rapF) [Bacillus amyloliquefaciens strain Fad 77]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=994779 AAVB98_RS10930 WP_013353955.1 2081495..2082640(-) (rapF) [Bacillus amyloliquefaciens strain Fad 77]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567