Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AAVB98_RS04705 Genome accession   NZ_CP154895
Coordinates   871723..872514 (-) Length   263 a.a.
NCBI ID   WP_013351434.1    Uniprot ID   A0AAP7TA01
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 866723..877514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS04665 (AAVB98_04665) - 866997..867332 (-) 336 WP_061573694.1 SdpI family protein -
  AAVB98_RS04670 (AAVB98_04670) - 867418..867945 (-) 528 WP_013351440.1 SH3 domain-containing protein -
  AAVB98_RS04675 (AAVB98_04675) - 868077..868346 (-) 270 WP_061573695.1 YfhJ family protein -
  AAVB98_RS04680 (AAVB98_04680) - 868470..868622 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  AAVB98_RS04685 (AAVB98_04685) - 868759..869673 (+) 915 WP_061573696.1 serine protease -
  AAVB98_RS04690 (AAVB98_04690) - 869636..870028 (+) 393 WP_013351437.1 DUF2606 family protein -
  AAVB98_RS04695 (AAVB98_04695) - 870067..871154 (-) 1088 Protein_917 MFS transporter -
  AAVB98_RS04700 (AAVB98_04700) - 871402..871716 (-) 315 WP_013351435.1 YfhH family protein -
  AAVB98_RS04705 (AAVB98_04705) recX 871723..872514 (-) 792 WP_013351434.1 recombination regulator RecX Regulator
  AAVB98_RS04710 (AAVB98_04710) - 872606..873505 (+) 900 WP_013351433.1 TIGR01777 family oxidoreductase -
  AAVB98_RS04715 (AAVB98_04715) - 873563..873673 (+) 111 WP_003223230.1 YfhE family protein -
  AAVB98_RS04720 (AAVB98_04720) - 873744..873935 (+) 192 WP_013351432.1 YfhD family protein -
  AAVB98_RS04725 (AAVB98_04725) - 873972..874556 (-) 585 WP_013351431.1 nitroreductase -
  AAVB98_RS04730 (AAVB98_04730) - 874633..875517 (-) 885 WP_013351430.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31009.23 Da        Isoelectric Point: 6.2753

>NTDB_id=994761 AAVB98_RS04705 WP_013351434.1 871723..872514(-) (recX) [Bacillus amyloliquefaciens strain Fad 77]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=994761 AAVB98_RS04705 WP_013351434.1 871723..872514(-) (recX) [Bacillus amyloliquefaciens strain Fad 77]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAACGCTTCAACATCTTCCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTTCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAAAAAAAAGAAACACCTGAGATGGTTATTTCTGAAGTCATCCACAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATTAAGGAGACGCTCAGTGCGTTTACGTTTGATGAGCAGATACAGGAA
GCGCTGAAACATATCGGAAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCCCAGATGCA
GCTTCAGCGAAAAGGCTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795

Multiple sequence alignment