Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAVD18_RS18530 Genome accession   NZ_CP154893
Coordinates   3546658..3547611 (+) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541658..3552611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS18505 (AAVD18_18505) - 3541699..3543126 (+) 1428 WP_161988189.1 HAMP domain-containing sensor histidine kinase -
  AAVD18_RS18510 (AAVD18_18510) rapC 3543285..3544433 (+) 1149 WP_013351004.1 tetratricopeptide repeat protein Regulator
  AAVD18_RS18515 (AAVD18_18515) phrC 3544417..3544536 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AAVD18_RS18520 (AAVD18_18520) - 3544684..3544785 (-) 102 WP_013351006.1 YjcZ family sporulation protein -
  AAVD18_RS18525 (AAVD18_18525) - 3544880..3546244 (-) 1365 WP_014469748.1 aspartate kinase -
  AAVD18_RS18530 (AAVD18_18530) ceuB 3546658..3547611 (+) 954 WP_013351008.1 ABC transporter permease Machinery gene
  AAVD18_RS18535 (AAVD18_18535) - 3547601..3548548 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  AAVD18_RS18540 (AAVD18_18540) - 3548542..3549300 (+) 759 WP_013351009.1 ABC transporter ATP-binding protein -
  AAVD18_RS18545 (AAVD18_18545) - 3549322..3550272 (+) 951 WP_013351010.1 siderophore ABC transporter substrate-binding protein -
  AAVD18_RS18550 (AAVD18_18550) - 3550313..3551737 (-) 1425 WP_061573955.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=994740 AAVD18_RS18530 WP_013351008.1 3546658..3547611(+) (ceuB) [Bacillus amyloliquefaciens strain Fad 11/2]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=994740 AAVD18_RS18530 WP_013351008.1 3546658..3547611(+) (ceuB) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCAGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCGAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
AATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTTAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTTCAGGGGGATTTCTCATTGGTCGTTAAAGGCCGCTACGAGCTTTTATACCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCTGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATTGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment