Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   AAVD18_RS18315 Genome accession   NZ_CP154893
Coordinates   3484992..3485390 (-) Length   132 a.a.
NCBI ID   WP_061573682.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3479992..3490390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS18290 (AAVD18_18290) - 3480167..3481369 (+) 1203 WP_013350962.1 GTP-binding protein -
  AAVD18_RS18295 (AAVD18_18295) - 3481433..3482564 (+) 1132 Protein_3554 zinc-dependent alcohol dehydrogenase -
  AAVD18_RS18300 (AAVD18_18300) - 3482579..3483013 (+) 435 WP_013350964.1 RDD family protein -
  AAVD18_RS18305 (AAVD18_18305) - 3483087..3483410 (+) 324 WP_013350965.1 YckD family protein -
  AAVD18_RS18310 (AAVD18_18310) - 3483515..3484951 (+) 1437 WP_013350966.1 family 1 glycosylhydrolase -
  AAVD18_RS18315 (AAVD18_18315) nin/comJ 3484992..3485390 (-) 399 WP_061573682.1 competence protein ComJ Regulator
  AAVD18_RS18320 (AAVD18_18320) nucA/comI 3485411..3485848 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVD18_RS18325 (AAVD18_18325) hxlB 3486199..3486756 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  AAVD18_RS18330 (AAVD18_18330) hxlA 3486753..3487388 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  AAVD18_RS18335 (AAVD18_18335) - 3487620..3487982 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14941.98 Da        Isoelectric Point: 4.6474

>NTDB_id=994735 AAVD18_RS18315 WP_061573682.1 3484992..3485390(-) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 11/2]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDKAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=994735 AAVD18_RS18315 WP_061573682.1 3484992..3485390(-) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 11/2]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATAAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment