Detailed information NTG0994725

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AAVD18_RS14630
• Genome accession: NZ_CP154893
• Coordinates: 2785421..2786566 (+)
• Length: 381 a.a.
• NCBI ID: WP_013353955.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 11/2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2780421..2791566

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD18_RS14610 (AAVD18_14610)	argS	2781084..2782754 (-)	1671	WP_013353950.1	arginine--tRNA ligase	-
AAVD18_RS14615 (AAVD18_14615)	-	2782751..2783179 (-)	429	WP_013353951.1	DUF1934 domain-containing protein	-
AAVD18_RS14620 (AAVD18_14620)	-	2783333..2783792 (+)	460	Protein_2868	bacteriocin biosynthesis protein AlbG	-
AAVD18_RS14625 (AAVD18_14625)	-	2783798..2785192 (-)	1395	WP_014471165.1	YncE family protein	-
AAVD18_RS14630 (AAVD18_14630)	rapF	2785421..2786566 (+)	1146	WP_013353955.1	tetratricopeptide repeat protein	Regulator
AAVD18_RS14635 (AAVD18_14635)	phrF	2786550..2786669 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
AAVD18_RS14640 (AAVD18_14640)	speB	2786783..2787655 (-)	873	WP_013353956.1	agmatinase	-
AAVD18_RS14645 (AAVD18_14645)	speE	2787714..2788544 (-)	831	WP_013353957.1	spermidine synthase	-
AAVD18_RS14650 (AAVD18_14650)	-	2788744..2790816 (+)	2073	WP_013353958.1	transglycosylase domain-containing protein	-
AAVD18_RS14655 (AAVD18_14655)	-	2790841..2791272 (-)	432	WP_013353959.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45480.54 Da
• Isoelectric Point: 4.6393

>NTDB_id=994725 AAVD18_RS14630 WP_013353955.1 2785421..2786566(+) (rapF) [Bacillus amyloliquefaciens strain Fad 11/2]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=994725 AAVD18_RS14630 WP_013353955.1 2785421..2786566(+) (rapF) [Bacillus amyloliquefaciens strain Fad 11/2]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567