Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAVD18_RS09900 Genome accession   NZ_CP154893
Coordinates   1864419..1865171 (-) Length   250 a.a.
NCBI ID   WP_013353066.1    Uniprot ID   A0A9P1JIQ0
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1859419..1870171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS09875 (AAVD18_09875) mreC 1859855..1860718 (-) 864 WP_061573716.1 rod shape-determining protein MreC -
  AAVD18_RS09880 (AAVD18_09880) mreB 1860749..1861762 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  AAVD18_RS09885 (AAVD18_09885) radC 1861854..1862549 (-) 696 WP_013353063.1 DNA repair protein RadC -
  AAVD18_RS09890 (AAVD18_09890) - 1862581..1863150 (-) 570 WP_013353064.1 Maf family protein -
  AAVD18_RS09895 (AAVD18_09895) - 1863292..1864293 (-) 1002 WP_061573715.1 SPOR domain-containing protein -
  AAVD18_RS09900 (AAVD18_09900) comC 1864419..1865171 (-) 753 WP_013353066.1 A24 family peptidase Machinery gene
  AAVD18_RS09905 (AAVD18_09905) - 1865314..1866606 (-) 1293 WP_013353067.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AAVD18_RS09910 (AAVD18_09910) - 1866665..1869307 (-) 2643 WP_013353068.1 valine--tRNA ligase -
  AAVD18_RS09915 (AAVD18_09915) - 1869758..1869949 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26869.51 Da        Isoelectric Point: 9.0703

>NTDB_id=994708 AAVD18_RS09900 WP_013353066.1 1864419..1865171(-) (comC) [Bacillus amyloliquefaciens strain Fad 11/2]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHFGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=994708 AAVD18_RS09900 WP_013353066.1 1864419..1865171(-) (comC) [Bacillus amyloliquefaciens strain Fad 11/2]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGGAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCCTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGCCGTGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAGAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTCATCGGCCTTGCGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592

Multiple sequence alignment