Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAVD18_RS03015 Genome accession   NZ_CP154893
Coordinates   542589..543053 (-) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 537589..548053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS02995 (AAVD18_02995) - 538075..539895 (+) 1821 WP_061573870.1 PAS domain-containing protein -
  AAVD18_RS03000 (AAVD18_03000) - 539920..541089 (-) 1170 WP_013352064.1 aminotransferase A -
  AAVD18_RS03005 (AAVD18_03005) - 541291..541452 (-) 162 WP_013352065.1 hypothetical protein -
  AAVD18_RS03010 (AAVD18_03010) cheV 541641..542552 (+) 912 WP_061573871.1 chemotaxis protein CheV -
  AAVD18_RS03015 (AAVD18_03015) kre 542589..543053 (-) 465 WP_013352067.1 YkyB family protein Regulator
  AAVD18_RS03020 (AAVD18_03020) - 543176..544468 (-) 1293 WP_061573872.1 MFS transporter -
  AAVD18_RS03025 (AAVD18_03025) - 544544..545038 (-) 495 WP_088030678.1 L,D-transpeptidase family protein -
  AAVD18_RS03030 (AAVD18_03030) - 545113..545976 (-) 864 WP_013352070.1 metallophosphoesterase -
  AAVD18_RS03035 (AAVD18_03035) fadH 546120..546884 (+) 765 WP_013352071.1 2,4-dienoyl-CoA reductase -
  AAVD18_RS03040 (AAVD18_03040) - 546998..547546 (+) 549 WP_013352072.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=994682 AAVD18_RS03015 WP_013352067.1 542589..543053(-) (kre) [Bacillus amyloliquefaciens strain Fad 11/2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=994682 AAVD18_RS03015 WP_013352067.1 542589..543053(-) (kre) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCCCTTGCCG
CCAACAGACAGCAGCCCGCTTATCATAAACCCGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935

Multiple sequence alignment