Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   EW032_RS06340 Genome accession   NZ_LR130509
Coordinates   1255853..1257004 (+) Length   383 a.a.
NCBI ID   WP_129621171.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2760 isolate BPH2760     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1250853..1262004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW032_RS06315 yfmH 1251681..1252967 (+) 1287 WP_129621167.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EW032_RS06320 ymfI 1252967..1253671 (+) 705 WP_000646231.1 elongation factor P 5-aminopentanone reductase -
  EW032_RS06325 - 1253776..1254603 (+) 828 WP_000214890.1 YmfK family protein -
  EW032_RS06330 - 1254622..1255014 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  EW032_RS06335 pgsA 1255048..1255626 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EW032_RS06340 cinA 1255853..1257004 (+) 1152 WP_129621171.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  EW032_RS06345 recA 1257169..1258212 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  EW032_RS06350 rny 1258566..1260125 (+) 1560 WP_001050913.1 ribonuclease Y -
  EW032_RS06355 - 1260422..1260637 (-) 216 WP_000026308.1 hypothetical protein -
  EW032_RS06360 - 1260811..1261608 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43266.61 Da        Isoelectric Point: 6.4459

>NTDB_id=994599 EW032_RS06340 WP_129621171.1 1255853..1257004(+) (cinA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLKSSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=994599 EW032_RS06340 WP_129621171.1 1255853..1257004(+) (cinA) [Staphylococcus aureus strain BPH2760 isolate BPH2760]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAAAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433