Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABCV34_RS10140 Genome accession   NZ_CP154879
Coordinates   2170048..2171310 (-) Length   420 a.a.
NCBI ID   WP_345796102.1    Uniprot ID   -
Organism   Castellaniella sp. MT123     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165048..2176310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCV34_RS10110 (ABCV34_10110) - 2165746..2166252 (-) 507 WP_345796096.1 CinA family protein -
  ABCV34_RS10115 (ABCV34_10115) - 2166249..2166779 (-) 531 WP_345796097.1 phosphatidylglycerophosphatase A -
  ABCV34_RS10120 (ABCV34_10120) thiL 2166782..2167756 (-) 975 WP_345796098.1 thiamine-phosphate kinase -
  ABCV34_RS10125 (ABCV34_10125) nusB 2167775..2168257 (-) 483 WP_345796099.1 transcription antitermination factor NusB -
  ABCV34_RS10130 (ABCV34_10130) ribH 2168250..2168768 (-) 519 WP_345796100.1 6,7-dimethyl-8-ribityllumazine synthase -
  ABCV34_RS10135 (ABCV34_10135) ribBA 2168785..2169969 (-) 1185 WP_345796101.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  ABCV34_RS10140 (ABCV34_10140) pilA 2170048..2171310 (-) 1263 WP_345796102.1 signal recognition particle-docking protein FtsY Machinery gene
  ABCV34_RS10145 (ABCV34_10145) - 2171373..2172002 (+) 630 WP_345796104.1 RsmD family RNA methyltransferase -
  ABCV34_RS10150 (ABCV34_10150) coaD 2171999..2172508 (+) 510 WP_345796105.1 pantetheine-phosphate adenylyltransferase -
  ABCV34_RS10155 (ABCV34_10155) - 2172552..2172938 (-) 387 WP_345796106.1 MOSC N-terminal beta barrel domain-containing protein -
  ABCV34_RS10160 (ABCV34_10160) - 2172962..2175556 (-) 2595 WP_345796107.1 AsmA family protein -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 43890.17 Da        Isoelectric Point: 4.8800

>NTDB_id=994527 ABCV34_RS10140 WP_345796102.1 2170048..2171310(-) (pilA) [Castellaniella sp. MT123]
MFSFFKRKKPQPQVDETIVQADAPEVAPVAPTELPSETLASRVSEAPAPEVAPVAPTELPPDALAAHQAEPLPQALAEMG
ISQPPDPWSDRPDASGDPLVRLDQTSAADAPVQNKSSWLTRLRQGLSRTGQNLGSLFVGVKVDEALFEELEVALIMADAG
VEATDKLLAELRARVRKQRIDQPEAVRAALQDILADHLKVLEKPFVVGESAPMVVMIAGVNGAGKTTSIGKLAHALQARQ
ATVLLAAGDTFRAAAREQLVAWGARNGVTVIAQEGGDPAAVAFDAVNAGRARAADVVLVDTAGRLPTQLHLMEELKKIKR
VIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAALGLTGLIVTKLDGTAKGGTLAAVAAGSQGVRPVPVYWIGVGEAMQ
DLQPFVAAEFAEALLGGRSG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=994527 ABCV34_RS10140 WP_345796102.1 2170048..2171310(-) (pilA) [Castellaniella sp. MT123]
ATGTTCAGTTTTTTTAAACGCAAGAAACCCCAGCCGCAGGTCGACGAGACCATCGTTCAGGCCGATGCGCCCGAAGTCGC
GCCTGTCGCGCCCACGGAACTTCCCTCGGAAACGCTGGCGTCCCGCGTGTCCGAGGCGCCAGCGCCCGAGGTCGCCCCGG
TGGCCCCGACGGAACTGCCACCGGATGCGCTGGCTGCGCACCAGGCCGAGCCATTGCCGCAGGCTCTTGCCGAAATGGGG
ATTTCGCAGCCGCCGGACCCCTGGTCGGATCGGCCGGATGCCTCGGGCGATCCACTGGTCCGCCTGGATCAGACTTCCGC
AGCGGATGCGCCGGTTCAGAACAAGAGCTCCTGGCTGACGCGTCTGCGACAGGGGTTGTCGCGCACGGGCCAGAACCTGG
GCAGTCTGTTCGTCGGCGTCAAGGTCGACGAAGCCCTGTTCGAGGAACTGGAAGTCGCGCTGATCATGGCGGATGCCGGT
GTCGAGGCCACCGACAAGCTGCTGGCCGAATTGCGGGCCCGAGTGCGCAAGCAGCGCATCGATCAACCCGAGGCCGTGCG
CGCCGCCCTCCAGGACATTCTGGCCGATCACCTGAAAGTGCTTGAAAAGCCCTTCGTGGTCGGGGAATCGGCCCCCATGG
TGGTGATGATCGCCGGGGTCAATGGCGCGGGCAAGACCACGTCCATCGGCAAGCTGGCCCATGCTCTGCAGGCCCGTCAG
GCCACTGTGCTCCTGGCCGCGGGTGACACCTTCCGCGCGGCGGCCCGTGAACAGCTGGTGGCCTGGGGGGCGCGTAACGG
CGTCACCGTGATCGCCCAGGAAGGTGGCGATCCGGCAGCGGTGGCCTTCGACGCGGTCAACGCGGGCCGTGCGCGCGCGG
CCGACGTGGTGCTGGTCGACACGGCCGGCCGGCTGCCCACGCAGCTGCATCTGATGGAAGAACTGAAGAAGATCAAACGC
GTCATCGGCAAGGCCGACGCCAGCGCTCCGCACGAAGTCCTGCTGGTGGTGGACGGCAATACCGGCCAGAATGCGCTGGC
GCAGATCCGGGCGTTCGATGCGGCGCTGGGCCTGACGGGGTTGATCGTCACCAAGCTGGACGGCACGGCCAAGGGCGGCA
CCCTGGCGGCTGTCGCGGCGGGCAGCCAGGGGGTGCGCCCGGTGCCGGTGTACTGGATCGGCGTCGGCGAAGCCATGCAG
GATCTGCAGCCCTTCGTGGCCGCGGAATTCGCCGAGGCGCTGCTGGGCGGCCGGTCGGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(212-416)

SRP54-type protein, helical bundle domain (SRP54_N)

(132-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.199

100

0.512

Multiple sequence alignment