Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABC765_RS01250 Genome accession   NZ_CP154878
Coordinates   285697..287073 (+) Length   458 a.a.
NCBI ID   WP_347952676.1    Uniprot ID   A0AAU7C441
Organism   Limosilactobacillus allomucosae strain WILCCON 0051     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280697..292073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC765_RS01225 (ABC765_01225) tnpA 282002..282456 (-) 455 Protein_226 IS200/IS605 family transposase -
  ABC765_RS01230 (ABC765_01230) - 282521..283777 (+) 1257 WP_347980548.1 transposase -
  ABC765_RS01235 (ABC765_01235) rpiA 283963..284643 (-) 681 WP_270642360.1 ribose-5-phosphate isomerase RpiA -
  ABC765_RS01240 (ABC765_01240) - 284657..284956 (-) 300 WP_006500502.1 GNAT family N-acetyltransferase -
  ABC765_RS01245 (ABC765_01245) - 285119..285658 (+) 540 WP_278768633.1 dUTP diphosphatase -
  ABC765_RS01250 (ABC765_01250) radA 285697..287073 (+) 1377 WP_347952676.1 DNA repair protein RadA Machinery gene
  ABC765_RS01255 (ABC765_01255) - 287120..288316 (+) 1197 WP_347963254.1 PIN/TRAM domain-containing protein -
  ABC765_RS01260 (ABC765_01260) gltX 288391..289890 (+) 1500 WP_347952678.1 glutamate--tRNA ligase -
  ABC765_RS01265 (ABC765_01265) - 290035..290643 (+) 609 WP_347980549.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49672.96 Da        Isoelectric Point: 7.7561

>NTDB_id=994504 ABC765_RS01250 WP_347952676.1 285697..287073(+) (radA) [Limosilactobacillus allomucosae strain WILCCON 0051]
MAKVKTQYICQNCGYNSPRYLGRCPNCGQWNTLVEERVETANAQSTTRHSSTLTGIVAKPQRVKDIDAQKLPRVKTKLNE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEGHSVLYVSGEESGAQIKMRAERLAVAGDDFYIYPETSMDSI
RATIDDLNPEYVVIDSVQTMQATDVNSAIGSVSQIREVTAQLMQIAKSKNITIFVVGHVTKGGALAGPKILEHMVDTVLY
FEGDLHHTYRILRAVKNRFGSTNELGIFEMRTAGLAEVKNPSEIFLEERLQDATGSAVVVSLEGTRPILVEIQALVTPTV
FGNAQRTATGLNRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAIAIASSYRDKGTRPDDAFVGEVGL
TGEIRRVSRIEQRVAEAAKLGFKRILVPKNNLQGWNPPADIEVVGVTTINEALRLALA

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=994504 ABC765_RS01250 WP_347952676.1 285697..287073(+) (radA) [Limosilactobacillus allomucosae strain WILCCON 0051]
ATGGCGAAAGTCAAAACCCAGTATATCTGTCAAAACTGCGGCTATAATTCGCCGCGTTACCTTGGCCGCTGCCCCAACTG
CGGTCAGTGGAATACTCTGGTTGAAGAACGCGTTGAGACGGCAAATGCGCAAAGTACAACGCGGCACTCGTCGACTTTGA
CGGGAATCGTTGCCAAACCGCAGCGCGTTAAGGATATCGATGCGCAAAAGCTGCCGCGCGTCAAGACTAAGCTAAATGAG
CTTAATCGTGTTTTAGGCGGCGGCATCGTACCAGGATCACTGATTTTGATTGGCGGGGATCCGGGAATCGGCAAGTCAAC
GCTTTTGCTGCAGGTTTCAGGCCAGCTCAGCGATGAGGGGCATTCCGTTCTGTATGTTTCGGGTGAGGAAAGCGGTGCGC
AGATCAAAATGCGTGCCGAACGGCTGGCAGTAGCCGGCGATGATTTCTACATCTACCCTGAGACCAGTATGGACAGCATT
CGGGCAACGATTGACGATCTGAATCCTGAATACGTGGTGATCGATTCGGTCCAGACCATGCAGGCAACCGATGTCAACAG
TGCGATCGGGAGCGTGTCGCAGATCAGAGAGGTTACCGCGCAGCTGATGCAGATTGCCAAAAGCAAGAACATTACGATTT
TTGTCGTTGGCCACGTTACTAAAGGCGGCGCGCTGGCAGGGCCTAAAATCTTGGAACACATGGTTGATACCGTTTTGTAC
TTTGAAGGCGATCTGCATCATACCTATCGAATCTTGCGGGCGGTTAAGAATCGTTTTGGCTCGACCAATGAACTGGGAAT
CTTTGAAATGCGCACGGCAGGGCTGGCAGAGGTCAAAAACCCATCTGAGATCTTTTTGGAAGAGCGGCTCCAGGATGCCA
CTGGCTCAGCCGTCGTGGTTTCTTTGGAAGGAACGCGGCCAATCCTGGTTGAGATTCAGGCTCTGGTTACGCCGACTGTC
TTTGGCAATGCTCAACGCACGGCGACGGGCTTGAATCGGAATCGGGTCTCTTTGATCATGGCGGTTTTAGAAAAGCGTGC
CAACCTTATGCTGCAGAATCAAGATGCCTATCTTAAGGCAGCCGGGGGCGTGAAATTGGATGAGCCAGCGATTGATCTGG
CGATTGCCATCGCGATTGCCTCCAGCTACCGTGACAAGGGGACGCGTCCTGATGATGCCTTTGTCGGCGAAGTTGGGCTG
ACCGGTGAGATTCGTCGTGTCAGCCGCATTGAGCAGCGGGTTGCTGAAGCGGCTAAGCTGGGCTTTAAACGAATTTTGGT
TCCTAAAAACAATCTGCAGGGTTGGAATCCGCCAGCTGATATTGAAGTGGTCGGCGTTACGACTATAAATGAGGCATTAC
GACTCGCATTAGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

65.939

100

0.659
  radA Streptococcus mitis NCTC 12261

65.721

100

0.657
  radA Streptococcus pneumoniae Rx1

65.721

100

0.657
  radA Streptococcus pneumoniae D39

65.721

100

0.657
  radA Streptococcus pneumoniae R6

65.721

100

0.657
  radA Streptococcus pneumoniae TIGR4

65.721

100

0.657
  radA Bacillus subtilis subsp. subtilis str. 168

64.333

99.782

0.642

Multiple sequence alignment