Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QMG27_RS11955 Genome accession   NZ_AP027058
Coordinates   2494862..2496433 (-) Length   523 a.a.
NCBI ID   WP_281811604.1    Uniprot ID   -
Organism   Limnohabitans sp. MORI2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2489862..2501433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG27_RS11925 (LMORI2_23230) apaG 2490593..2490985 (+) 393 WP_281811592.1 Co2+/Mg2+ efflux protein ApaG -
  QMG27_RS11930 (LMORI2_23240) thiL 2490991..2491980 (+) 990 WP_281811594.1 thiamine-phosphate kinase -
  QMG27_RS11935 (LMORI2_23250) - 2491993..2492499 (+) 507 WP_281811596.1 phosphatidylglycerophosphatase A -
  QMG27_RS11940 (LMORI2_23260) - 2492496..2493011 (+) 516 WP_281811598.1 CinA family protein -
  QMG27_RS11945 (LMORI2_23270) - 2493037..2493483 (-) 447 WP_281811600.1 putative toxin-antitoxin system toxin component, PIN family -
  QMG27_RS11950 (LMORI2_23280) - 2493480..2494853 (-) 1374 WP_281811602.1 THUMP domain-containing protein -
  QMG27_RS11955 (LMORI2_23290) rpoN/rpoN1 2494862..2496433 (-) 1572 WP_281811604.1 RNA polymerase factor sigma-54 Machinery gene
  QMG27_RS11960 (LMORI2_23300) lptB 2496443..2497189 (-) 747 WP_281814655.1 LPS export ABC transporter ATP-binding protein -
  QMG27_RS11965 (LMORI2_23310) lptA 2497222..2497740 (-) 519 WP_281814658.1 lipopolysaccharide transport periplasmic protein LptA -
  QMG27_RS11970 (LMORI2_23320) - 2497866..2498525 (-) 660 WP_281811606.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMG27_RS11975 (LMORI2_23330) - 2498543..2499211 (-) 669 WP_281811608.1 SPOR domain-containing protein -
  QMG27_RS11980 (LMORI2_23340) argS 2499230..2500939 (-) 1710 WP_281811610.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 58033.45 Da        Isoelectric Point: 4.6963

>NTDB_id=99450 QMG27_RS11955 WP_281811604.1 2494862..2496433(-) (rpoN/rpoN1) [Limnohabitans sp. MORI2]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEIEQMLDENPFLDKDFEEAPREEFGLDKADTPARDDEVETTREVP
SLDGVMSEISVDNTASDTEPSVDGVAESWDGDGSVEFSADDSEWGGDAPASNSNNTADSDAADATELARMQESLASHLHR
QALALRLSPTDQAALRYLIENLNDDGYLEDTLRSLAEGLGGDDEEQIEELEHRFQVALSLLQSLEPVGVGARDLAECLTL
QLKALEPKGEEALQIRDTAIRMCKQPMDMLAKRDFKRLAVLVGDSEANVKVAIALIGRLEPKPGRRFADVERHVVVPDVL
VTRVGKSTTAPKFKVALNPDVMPRLRVHDIYANALKGGKGEAHAGLQQRLQEARWFIKNIQQRFDTILRVSNAIAERQKN
FFIHGELAMRPMVLREIAEELGLHESTISRVTTNKYMSTPYGTFELKYFFGSGLETESGNNASSTAVRALIKQFVASENP
KKPLSDNQLSEMLKEQGIECARRTVAKYREALRIAPTTLRKAL

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=99450 QMG27_RS11955 WP_281811604.1 2494862..2496433(-) (rpoN/rpoN1) [Limnohabitans sp. MORI2]
ATGAAACAAGGCTTATCACTCCGCGTTTCCCAACATCTGGCGCTCACGCCCCAGTTGCAGCAGTCGATCCGACTGCTGCA
GTTGTCGACGCTGGAGTTGAGCCAAGAGATTGAGCAAATGCTCGATGAGAACCCGTTTCTAGACAAAGACTTTGAAGAAG
CCCCTCGCGAAGAATTTGGTTTAGACAAGGCTGATACACCTGCGCGCGATGACGAGGTGGAGACCACGCGCGAGGTGCCA
TCTCTCGATGGCGTCATGTCCGAAATCAGTGTAGATAACACAGCCAGCGACACTGAGCCAAGTGTGGACGGTGTGGCTGA
GAGCTGGGATGGCGACGGCAGCGTGGAGTTTTCTGCGGACGATTCTGAGTGGGGCGGCGACGCGCCCGCGAGCAACAGCA
ACAACACCGCAGACAGTGATGCTGCCGATGCGACTGAGCTGGCGCGCATGCAAGAGTCGCTGGCCTCGCATTTGCATCGC
CAAGCACTGGCTTTGCGCTTGAGCCCTACTGATCAAGCTGCCTTGCGTTATTTGATTGAAAACCTCAACGACGACGGCTA
CCTGGAAGACACCTTGCGCAGCTTGGCCGAAGGTTTGGGTGGCGACGACGAAGAGCAAATCGAAGAGCTCGAACACCGCT
TCCAAGTTGCCTTGTCACTGCTGCAAAGCCTAGAGCCTGTGGGCGTGGGTGCACGCGATTTGGCCGAGTGCTTGACACTG
CAACTCAAAGCCTTGGAGCCCAAGGGTGAAGAAGCTTTGCAGATCCGTGACACAGCCATTCGCATGTGCAAGCAACCGAT
GGACATGTTGGCCAAACGCGATTTCAAACGCTTGGCCGTGTTGGTGGGCGACAGCGAAGCCAATGTGAAAGTGGCCATTG
CGTTGATTGGCCGCTTAGAGCCCAAGCCCGGCCGCCGCTTTGCAGATGTTGAGCGTCATGTGGTGGTGCCCGATGTGTTG
GTCACCCGTGTGGGCAAGTCAACTACTGCTCCGAAATTCAAGGTGGCTTTGAACCCCGATGTGATGCCCCGTTTGCGCGT
GCACGACATTTACGCCAACGCACTCAAAGGCGGCAAAGGCGAAGCGCATGCGGGTTTGCAACAGCGCTTGCAAGAAGCGC
GTTGGTTCATCAAAAACATCCAGCAACGCTTTGACACCATCTTGCGTGTGAGCAACGCGATTGCCGAGCGTCAAAAGAAC
TTCTTCATCCACGGTGAGCTCGCCATGCGCCCCATGGTGCTGCGGGAGATCGCCGAAGAGTTGGGGCTACACGAGTCCAC
CATCAGCCGTGTGACGACCAATAAATATATGAGCACGCCCTACGGCACGTTTGAGCTCAAGTATTTCTTTGGCTCTGGCC
TTGAGACAGAGAGCGGCAACAACGCGTCGAGTACAGCGGTGCGTGCGCTCATCAAACAATTTGTGGCGAGCGAAAACCCT
AAAAAACCGCTGTCGGATAATCAGCTTTCCGAAATGCTCAAAGAGCAAGGCATTGAGTGCGCTCGCCGCACCGTGGCCAA
ATACCGTGAGGCGCTGCGTATTGCGCCCACGACATTGCGCAAAGCGCTCTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(366-521)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(146-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.245

100

0.499

Multiple sequence alignment