Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   EW023_RS08460 Genome accession   NZ_LR130239
Coordinates   1655625..1656104 (-) Length   159 a.a.
NCBI ID   WP_229293986.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain PS003 isolate PS003     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1650625..1661104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW023_RS08440 - 1650803..1651408 (-) 606 WP_023611858.1 response regulator -
  EW023_RS08445 - 1651389..1652951 (-) 1563 WP_023611856.1 ATP-binding protein -
  EW023_RS08450 - 1652985..1654889 (-) 1905 WP_050336385.1 FtsX-like permease family protein -
  EW023_RS08455 - 1654891..1655628 (-) 738 WP_002988104.1 ABC transporter ATP-binding protein -
  EW023_RS08460 comA/nlmT 1655625..1656104 (-) 480 WP_229293986.1 ATP-binding cassette domain-containing protein Regulator
  EW023_RS08465 - 1656160..1657785 (-) 1626 WP_050336386.1 DUF4135 domain-containing protein -
  EW023_RS08470 - 1657868..1658023 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  EW023_RS08475 lacG 1658526..1659932 (-) 1407 WP_023611830.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18466.08 Da        Isoelectric Point: 6.0020

>NTDB_id=994453 EW023_RS08460 WP_229293986.1 1655625..1656104(-) (comA/nlmT) [Streptococcus pyogenes strain PS003 isolate PS003]
MFDGDVMYNISLGRESVSGEQVIETCKRVSIYDDIMSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGSHHCLYKNNEYYRDLYDSYMNNYQEEEIK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=994453 EW023_RS08460 WP_229293986.1 1655625..1656104(-) (comA/nlmT) [Streptococcus pyogenes strain PS003 isolate PS003]
ATATTTGATGGGGATGTGATGTATAACATTTCGCTAGGGAGAGAATCTGTTTCAGGAGAACAGGTTATTGAAACTTGTAA
AAGGGTATCAATATATGATGATATCATGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGGAAAATTATTGACTATGGTAGTCATCATT
GTTTATATAAAAATAATGAGTACTATCGTGATTTATATGATTCGTACATGAACAACTATCAGGAGGAAGAGATAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

40.268

93.711

0.377
  rcrQ Streptococcus mutans UA159

39.333

94.34

0.371

Multiple sequence alignment