Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | ABBFA_RS03185 | Genome accession | NZ_CP001172 |
| Coordinates | 651756..652271 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii AB307-0294 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 646756..657271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABBFA_RS03160 (ABBFA_00616) | - | 647302..648945 (+) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
| ABBFA_RS03165 (ABBFA_00617) | - | 648938..649423 (+) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| ABBFA_RS03170 (ABBFA_00618) | - | 649506..649859 (+) | 354 | WP_000457783.1 | multidrug efflux SMR transporter | - |
| ABBFA_RS03175 (ABBFA_00619) | - | 649902..650345 (-) | 444 | WP_001176585.1 | VOC family protein | - |
| ABBFA_RS03180 (ABBFA_00620) | - | 650472..651647 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| ABBFA_RS03185 (ABBFA_00621) | fimT | 651756..652271 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| ABBFA_RS03190 (ABBFA_00622) | omp38 | 652651..653712 (+) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| ABBFA_RS17880 (ABBFA_00623) | - | 653835..653978 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| ABBFA_RS03195 (ABBFA_00624) | - | 653997..655202 (-) | 1206 | WP_000512708.1 | RtcB family protein | - |
| ABBFA_RS03200 (ABBFA_00625) | - | 655480..656940 (-) | 1461 | WP_000004974.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=99437 ABBFA_RS03185 WP_000477151.1 651756..652271(-) (fimT) [Acinetobacter baumannii AB307-0294]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=99437 ABBFA_RS03185 WP_000477151.1 651756..652271(-) (fimT) [Acinetobacter baumannii AB307-0294]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |