Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMG27_RS00300 Genome accession   NZ_AP027058
Coordinates   72818..74194 (+) Length   458 a.a.
NCBI ID   WP_281811997.1    Uniprot ID   -
Organism   Limnohabitans sp. MORI2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67818..79194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG27_RS00290 (LMORI2_00590) alr 68892..69986 (+) 1095 WP_281811993.1 alanine racemase -
  QMG27_RS00295 (LMORI2_00600) - 70084..72774 (+) 2691 WP_281811995.1 response regulator -
  QMG27_RS00300 (LMORI2_00610) radA 72818..74194 (+) 1377 WP_281811997.1 DNA repair protein RadA Machinery gene
  QMG27_RS00305 (LMORI2_00620) - 74199..75749 (-) 1551 WP_281811999.1 DUF5666 domain-containing protein -
  QMG27_RS00310 (LMORI2_00630) - 75881..76261 (+) 381 WP_281812001.1 DUF1924 domain-containing protein -
  QMG27_RS00315 (LMORI2_00640) - 76274..76744 (+) 471 WP_281812003.1 diheme cytochrome c -
  QMG27_RS00320 (LMORI2_00650) - 76741..77349 (+) 609 WP_281812005.1 cytochrome b/b6 domain-containing protein -
  QMG27_RS00325 (LMORI2_00660) - 77324..77980 (+) 657 WP_281812007.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48149.47 Da        Isoelectric Point: 6.7598

>NTDB_id=99437 QMG27_RS00300 WP_281811997.1 72818..74194(+) (radA) [Limnohabitans sp. MORI2]
MAKDKTQYTCTDCGGISAKWLGKCPSCGAWNTLIESAVETAAATKNRYAGMAALAPASEVAILSDIEAQDVARTPTGQDE
LDRVLGGGMVEGGVVLIGGDPGIGKSTLLLQAMDGLQRSGMSTLYVTGEESGAQVALRSRRLGLDHSQVQVLAETQLEKV
LATVDKLQPAVVVMDSIQTVYSDQLTSAPGSVAQVRECAAHLTRMAKSTGTAVVLVGHVTKEGALAGPRVLEHMVDTVLY
FEGDTHSSYRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHTEPVPGSCVLVTLEGTRPMLVEVQALVDTGG
PSPRRLSVGLDRDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLSVLLSIQSSLRGKPLPQGFIAFGEVGLA
GEVRPAPRGQERLKEAAKLGFSVAIIPKANAPKKPIEGLKVHAVERVDEAIALVRELG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=99437 QMG27_RS00300 WP_281811997.1 72818..74194(+) (radA) [Limnohabitans sp. MORI2]
ATGGCCAAAGACAAAACCCAATACACCTGTACCGACTGCGGTGGCATCAGCGCCAAGTGGCTGGGCAAATGCCCGTCCTG
CGGCGCATGGAACACGCTGATAGAAAGCGCAGTCGAAACCGCTGCCGCCACCAAAAATCGCTACGCCGGTATGGCCGCCT
TGGCCCCCGCATCAGAGGTGGCGATTCTTTCCGACATCGAAGCGCAAGACGTGGCCCGCACACCCACGGGCCAAGACGAG
CTAGACCGCGTGTTGGGCGGCGGCATGGTGGAAGGCGGCGTGGTGCTGATTGGCGGCGACCCCGGCATTGGCAAATCCAC
GTTGTTGTTGCAAGCCATGGACGGTTTGCAGCGCAGCGGCATGAGCACGCTGTATGTGACGGGTGAAGAGTCGGGTGCAC
AAGTGGCCCTGCGCTCGCGTCGTTTGGGGTTGGACCACTCGCAAGTGCAAGTGCTGGCTGAAACCCAGCTTGAAAAAGTG
TTGGCCACCGTCGACAAATTGCAGCCTGCCGTGGTGGTGATGGACTCCATTCAAACCGTGTATTCCGATCAACTCACCAG
CGCACCGGGCTCGGTGGCGCAGGTGCGCGAATGCGCGGCACACCTCACGCGCATGGCCAAGTCCACAGGGACCGCCGTGG
TGTTGGTGGGGCACGTAACCAAAGAGGGCGCACTCGCTGGCCCGCGCGTGCTCGAGCACATGGTGGACACGGTGTTGTAC
TTTGAAGGCGACACCCATTCCAGCTACCGTTTGGTGCGCGCCATCAAAAACCGCTTTGGTGCGGTGAACGAAATTGGCGT
CTTTGCCATGACCGAAAAAGGCTTGAAAGGTGTGAGCAACCCGAGCGCCATCTTTTTGAGCCAACACACCGAGCCCGTGC
CCGGAAGTTGTGTGCTGGTCACGCTTGAAGGCACGCGGCCCATGTTGGTGGAGGTGCAAGCCTTGGTTGATACCGGTGGC
CCATCGCCCCGCCGCTTGAGCGTGGGCTTGGACCGCGATCGCTTGGCCATGTTGCTGGCTGTGTTGCATCGCCACGCAGG
CGTGGCGTGCATGGACCAAGATGTGTTCGTCAACGCCGTCGGCGGCGTGCGCATCAGCGAACCGGCAGCAGACTTGTCGG
TGCTGCTGTCAATTCAAAGTAGCTTACGTGGTAAGCCGCTGCCGCAAGGCTTCATTGCCTTTGGCGAAGTGGGCTTGGCG
GGCGAGGTGCGCCCCGCACCGCGTGGTCAAGAGCGCTTGAAAGAAGCCGCCAAACTGGGCTTTAGCGTGGCTATCATTCC
TAAGGCGAATGCACCTAAAAAACCGATTGAAGGCTTAAAGGTGCATGCGGTCGAGCGGGTGGACGAAGCCATTGCTCTGG
TGCGTGAGCTGGGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.339

99.127

0.489
  radA Streptococcus mitis NCTC 12261

45.796

98.69

0.452
  radA Streptococcus mitis SK321

45.796

98.69

0.452
  radA Streptococcus pneumoniae TIGR4

47.319

93.668

0.443
  radA Streptococcus pneumoniae D39

47.319

93.668

0.443
  radA Streptococcus pneumoniae Rx1

47.319

93.668

0.443
  radA Streptococcus pneumoniae R6

47.319

93.668

0.443

Multiple sequence alignment