Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAYT22_RS05435 Genome accession   NZ_CP154876
Coordinates   1075008..1075817 (-) Length   269 a.a.
NCBI ID   WP_001289492.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20155336     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070008..1080817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT22_RS05410 (AAYT22_05395) - 1070634..1071620 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  AAYT22_RS05415 (AAYT22_05400) - 1071912..1073258 (+) 1347 WP_001813192.1 IS1380-like element ISSpn5 family transposase -
  AAYT22_RS05420 (AAYT22_05405) - 1073629..1074372 (-) 744 Protein_1070 potassium channel family protein -
  AAYT22_RS05425 (AAYT22_05410) - 1074419..1074673 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  AAYT22_RS05430 (AAYT22_05415) relB 1074675..1074917 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  AAYT22_RS05435 (AAYT22_05420) vicX 1075008..1075817 (-) 810 WP_001289492.1 MBL fold metallo-hydrolase Regulator
  AAYT22_RS05440 (AAYT22_05425) micB 1075819..1077168 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AAYT22_RS05445 (AAYT22_05430) micA 1077161..1077865 (-) 705 WP_000722076.1 response regulator YycF Regulator
  AAYT22_RS05450 (AAYT22_05435) mutY 1077920..1079095 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29988.95 Da        Isoelectric Point: 5.9919

>NTDB_id=994369 AAYT22_RS05435 WP_001289492.1 1075008..1075817(-) (vicX) [Streptococcus pneumoniae strain 20155336]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVEVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=994369 AAYT22_RS05435 WP_001289492.1 1075008..1075817(-) (vicX) [Streptococcus pneumoniae strain 20155336]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGAAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment