Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAG092_RS12645 Genome accession   NZ_CP154874
Coordinates   2599923..2601419 (-) Length   498 a.a.
NCBI ID   WP_373386961.1    Uniprot ID   -
Organism   Pseudomonas alcaligenes strain Med1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2594923..2606419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG092_RS12630 (AAG092_12560) - 2595744..2596673 (+) 930 WP_373386958.1 LysR substrate-binding domain-containing protein -
  AAG092_RS12635 (AAG092_12565) - 2596997..2597794 (+) 798 WP_373386959.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AAG092_RS12640 (AAG092_12570) - 2597842..2599809 (-) 1968 WP_373386960.1 BCCT family transporter -
  AAG092_RS12645 (AAG092_12575) comM 2599923..2601419 (-) 1497 WP_373386961.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAG092_RS12650 (AAG092_12580) - 2601451..2601711 (-) 261 WP_110682786.1 accessory factor UbiK family protein -
  AAG092_RS12655 (AAG092_12585) glnK 2602114..2602452 (+) 339 WP_021700071.1 P-II family nitrogen regulator -
  AAG092_RS12660 (AAG092_12590) - 2602488..2603804 (+) 1317 WP_373386962.1 ammonium transporter -
  AAG092_RS12665 (AAG092_12595) - 2603899..2605149 (+) 1251 WP_373386963.1 ammonium transporter -
  AAG092_RS12670 (AAG092_12600) - 2605247..2605672 (+) 426 WP_373386964.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AAG092_RS12675 (AAG092_12605) sutA 2605761..2606090 (+) 330 WP_110682789.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52758.62 Da        Isoelectric Point: 8.3357

>NTDB_id=994331 AAG092_RS12645 WP_373386961.1 2599923..2601419(-) (comM) [Pseudomonas alcaligenes strain Med1]
MSLAIVHSRAQVGVEAPPVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAIQNAGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGVLAASEQVPAAGLGELECLGELALSGELRAVQGVLPAALAARAAGRTLVVPRANAEEASLASGLKVLAVDHL
LQIAAHLNGHTPLSPYQANGLLRQEAAYPDLAEVQGQLAAKRALLIAASGGHNLLLSGPPGTGKTLLASRLPGLLPALSE
EEALEVAAIHSVASHAPLTAWPRRPFRQPHHSASGPALVGGGSRPQPGEISLAHHGILFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPGGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVARESTSLLASSQA
GESSARVAARVSQARQRQLARQGCANAFLDLPGLQQHCRLPEADRLWLEQACERLNLSLRAAHRLLKVARTLADLEGASE
IGRAHLAEALQYRPSNGI

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=994331 AAG092_RS12645 WP_373386961.1 2599923..2601419(-) (comM) [Pseudomonas alcaligenes strain Med1]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAAGCGCCGCCCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCAGCCCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGTGCGATCC
AGAACGCCGGCTTCGATTTCCCGCCGCGGCGCATCACCCTCAACCTGGCGCCTGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGGCCATCGCCCTCGGCGTGCTGGCGGCCAGCGAGCAGGTGCCGGCGGCCGGCCTGGGCGAACTGGAATGCCT
GGGCGAGCTGGCGCTGTCCGGCGAGCTGCGCGCGGTACAGGGCGTGCTGCCCGCCGCCCTGGCCGCCCGCGCCGCCGGAC
GCACCCTGGTGGTGCCGCGGGCCAATGCTGAGGAAGCCAGCCTGGCCTCGGGCCTCAAGGTGCTGGCAGTCGACCACCTG
CTGCAGATCGCCGCCCACCTCAACGGCCACACGCCGTTATCGCCCTATCAGGCCAACGGCCTGCTGCGCCAGGAAGCGGC
TTACCCCGACCTGGCCGAAGTGCAGGGCCAGCTGGCGGCCAAGCGCGCCCTGCTGATCGCCGCCAGCGGCGGCCACAACC
TGCTGCTCAGCGGGCCTCCGGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGCTGCCCGCACTGTCCGAG
GAGGAGGCGCTGGAAGTGGCGGCCATCCATTCGGTGGCCAGCCATGCGCCGCTCACCGCCTGGCCGCGCCGACCCTTCCG
CCAGCCGCATCACAGTGCCTCCGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAACCCGGCGAGATCAGCCTGGCCC
ATCACGGCATCCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCAAGGTCCTCGAGGTCCTGCGCGAGCCTCTGGAGTCC
GGCCATATCGTGATCGCCCGGGCCCGCGACAAGGTGCGCTTCCCTGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCGGCGGCCGCTGCCGCTGCACTCCTGAACAGATCCAGCGCTACCGCGCCAAGCTGT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTCACCGTGGCGCGCGAAAGCACCAGCCTGCTGGCCAGCAGCCAGGCT
GGCGAGAGCAGCGCCCGGGTCGCCGCCCGCGTCAGCCAGGCACGCCAGCGCCAGCTCGCGCGCCAGGGCTGCGCCAATGC
CTTCCTCGATCTGCCGGGCCTGCAGCAGCATTGCCGCCTGCCCGAGGCCGACCGGCTGTGGCTGGAGCAGGCCTGCGAAC
GCCTCAACCTGTCGCTGCGGGCAGCCCATCGCCTACTCAAGGTGGCGCGCACCCTGGCCGACCTGGAAGGCGCCAGCGAG
ATCGGCCGCGCGCACCTGGCCGAGGCCCTGCAGTACCGTCCCAGCAACGGCATCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.778

99.398

0.574
  comM Vibrio cholerae strain A1552

57.576

99.398

0.572
  comM Glaesserella parasuis strain SC1401

54.781

100

0.552
  comM Haemophilus influenzae Rd KW20

54.291

100

0.546
  comM Legionella pneumophila str. Paris

51.807

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.807

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.468

Multiple sequence alignment