Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAJG31_RS22700 Genome accession   NZ_CP154860
Coordinates   4538023..4539714 (+) Length   563 a.a.
NCBI ID   WP_054549167.1    Uniprot ID   -
Organism   Lysinibacillus sp. BS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4533023..4544714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAJG31_RS22675 (AAJG31_22675) xseB 4533438..4533671 (+) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -
  AAJG31_RS22680 (AAJG31_22680) - 4533675..4534556 (+) 882 WP_054549165.1 polyprenyl synthetase family protein -
  AAJG31_RS22685 (AAJG31_22685) dxs 4534720..4536621 (+) 1902 WP_048392297.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAJG31_RS22690 (AAJG31_22690) - 4536621..4537439 (+) 819 WP_004231167.1 TlyA family RNA methyltransferase -
  AAJG31_RS22695 (AAJG31_22695) argR 4537540..4537989 (+) 450 WP_004231170.1 transcriptional regulator ArgR -
  AAJG31_RS22700 (AAJG31_22700) recN 4538023..4539714 (+) 1692 WP_054549167.1 DNA repair protein RecN Machinery gene
  AAJG31_RS22705 (AAJG31_22705) - 4539837..4540784 (+) 948 WP_048392300.1 SpoIVB peptidase S55 domain-containing protein -
  AAJG31_RS22710 (AAJG31_22710) spo0A 4541169..4541960 (+) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  AAJG31_RS22715 (AAJG31_22715) - 4542101..4543072 (+) 972 WP_279495469.1 tyrosine-type recombinase/integrase -
  AAJG31_RS22720 (AAJG31_22720) - 4543799..4544512 (+) 714 WP_279495468.1 hypothetical protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63451.26 Da        Isoelectric Point: 4.6214

>NTDB_id=994198 AAJG31_RS22700 WP_054549167.1 4538023..4539714(+) (recN) [Lysinibacillus sp. BS3]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KNYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGTT
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=994198 AAJG31_RS22700 WP_054549167.1 4538023..4539714(+) (recN) [Lysinibacillus sp. BS3]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCTATTATCATTGATGCGGTGCATTTACTTGCAGGAGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGTGATTTGAATGATACCGGTAAAAGTATTTG
CCGAGTGAATGGAAAGCTCGTGCCTTTGTCGGTACTAAGAGACATTGGGGCAAGTCTCATAGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATCAATTTGCTTGATCAGTTTGCAGAAGAAGAGCTGTCGCCGATTCAA
AAAAACTATCGCGCCCAATATGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCTATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGTTCTAGTGCAGCCTATGAAGCCATTCAGGGC
GAAACGAAAGGGCTTGATTGGATCGGAACAGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAACAATTCAAAGA
ATCATCTGAGGCAGTGACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTGG
AATTTGACCCTGCACGTTTAAACGAGGTTGAGCAGCGTTTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTACGACA
GTGGAAGAGATTTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CTCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGATGCCAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAACCACCAAAGTC
TTTACCGAAAATTGCATCAGGTGGAGAATTATCACGAATGATGCTAGCGTTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATCTTTGATGAGGTGGATACAGGTGTCAGTGGTCGGGTTGCGCAGGCGATTGCAGAGAAAATTGCCGCG
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATTAA
AAAAGAAGTCGAGCATGATCGAACGTTTACTTCCTTATCAGAGATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACGGAAATTACAGCGTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.34

100

0.536

Multiple sequence alignment