Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAJG31_RS14145 Genome accession   NZ_CP154860
Coordinates   2884079..2885455 (+) Length   458 a.a.
NCBI ID   WP_004233577.1    Uniprot ID   A0A2X0Y605
Organism   Lysinibacillus sp. BS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2879079..2890455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAJG31_RS14125 (AAJG31_14125) - 2879421..2879891 (+) 471 WP_004233573.1 CtsR family transcriptional regulator -
  AAJG31_RS14130 (AAJG31_14130) - 2879905..2880447 (+) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  AAJG31_RS14135 (AAJG31_14135) - 2880444..2881553 (+) 1110 WP_048395539.1 protein arginine kinase -
  AAJG31_RS14140 (AAJG31_14140) - 2881543..2883987 (+) 2445 WP_048395540.1 ATP-dependent Clp protease ATP-binding subunit -
  AAJG31_RS14145 (AAJG31_14145) radA 2884079..2885455 (+) 1377 WP_004233577.1 DNA repair protein RadA Machinery gene
  AAJG31_RS14150 (AAJG31_14150) - 2885738..2886823 (+) 1086 WP_004233578.1 PIN/TRAM domain-containing protein -
  AAJG31_RS14155 (AAJG31_14155) ispD 2886835..2887530 (+) 696 WP_048395541.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAJG31_RS14160 (AAJG31_14160) epsC 2887845..2888786 (+) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  AAJG31_RS14165 (AAJG31_14165) ispF 2888928..2889404 (+) 477 WP_004233581.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50187.01 Da        Isoelectric Point: 7.3825

>NTDB_id=994188 AAJG31_RS14145 WP_004233577.1 2884079..2885455(+) (radA) [Lysinibacillus sp. BS3]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDEVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=994188 AAJG31_RS14145 WP_004233577.1 2884079..2885455(+) (radA) [Lysinibacillus sp. BS3]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAATCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAAATGGTTGCAAAAGGCCCACGTGGAGCATTTCAACATTCTGCTACAG
TTACTCAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGCGTAGCAACAGAAATGGGCGAACTCAAT
CGTGTATTAGGCGGTGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGTGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTCTCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATACTCTGAAACAAACCTAGAGTTTTTAAACCAA
ACCATTGATGAAGTACAACCTAAATTTGTCATCGTCGATTCCATACAAACGGTTTTTCATCCAGAAGTAACAAGCGCCCC
AGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACAAAAGGTATTGCTATTTTTCTAG
TAGGGCATGTCACAAAAGAGGGACAAATTGCAGGGCCACGTATTTTAGAGCATATGGTGGATACTGTACTGTACTTTGAA
GGGGAGAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGTGGGTTAAAGGAAGTTCTAAACCCTTCTGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCCTCAATGGAGGGGACAAGGCCAATCCTTGTTGAAATTCAATCCTTAGTTACGCCTACGAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTAGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCGGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGCTTTATTGGTGAGGTCGGACTGACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGAGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCTTTCATTCCTTC
TTCGAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(64-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0Y605

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.705

99.127

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62

Multiple sequence alignment