Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   QMG15_RS12055 Genome accession   NZ_AP027055
Coordinates   2409463..2411034 (-) Length   523 a.a.
NCBI ID   WP_281788785.1    Uniprot ID   -
Organism   Limnohabitans sp. INBF002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2404463..2416034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS12025 (LINBF2_23710) apaG 2405120..2405512 (+) 393 WP_108360464.1 Co2+/Mg2+ efflux protein ApaG -
  QMG15_RS12030 (LINBF2_23720) thiL 2405524..2406513 (+) 990 WP_281788780.1 thiamine-phosphate kinase -
  QMG15_RS12035 (LINBF2_23730) - 2406524..2407012 (+) 489 WP_281788781.1 phosphatidylglycerophosphatase A -
  QMG15_RS12040 (LINBF2_23740) - 2407009..2407524 (+) 516 WP_281788782.1 CinA family protein -
  QMG15_RS12045 (LINBF2_23750) - 2407556..2408002 (-) 447 WP_281788783.1 putative toxin-antitoxin system toxin component, PIN family -
  QMG15_RS12050 (LINBF2_23760) - 2407999..2409414 (-) 1416 WP_281788784.1 THUMP domain-containing protein -
  QMG15_RS12055 (LINBF2_23770) rpoN/rpoN1 2409463..2411034 (-) 1572 WP_281788785.1 RNA polymerase factor sigma-54 Machinery gene
  QMG15_RS12060 (LINBF2_23780) lptB 2411138..2411920 (-) 783 WP_281788786.1 LPS export ABC transporter ATP-binding protein -
  QMG15_RS12065 (LINBF2_23790) lptA 2411917..2412435 (-) 519 WP_281790140.1 lipopolysaccharide transport periplasmic protein LptA -
  QMG15_RS12070 (LINBF2_23800) - 2412547..2413206 (-) 660 WP_281788787.1 thiol:disulfide interchange protein DsbA/DsbL -
  QMG15_RS12075 (LINBF2_23810) - 2413224..2413910 (-) 687 WP_281788788.1 SPOR domain-containing protein -
  QMG15_RS12080 (LINBF2_23820) argS 2413931..2415640 (-) 1710 WP_281788789.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 58102.61 Da        Isoelectric Point: 4.6670

>NTDB_id=99417 QMG15_RS12055 WP_281788785.1 2409463..2411034(-) (rpoN/rpoN1) [Limnohabitans sp. INBF002]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEIEQMLDENPFLDKEFEEAPREEFGLDKADAPTRDEEVEPVREVP
SLDGGMSEISVDNTASDTEPSVDGVAESWDGDGSVEFSADDSEWGGDAPASNNNNTADSDTADATELARMQESLTSHLHR
QALALRLSPTDQAALRYLIENLNDDGYLEDTLRSLAEGLGGDDEEEIEELEHRFQVALSLLQSLEPVGVGARDLAECLTL
QLKALTPKGEEALQIRDTAILMCKQPMEMLAKRDFKRLAVIVGDSEANVKVAIALIGRLEPKPGRRFADVERHVVVPDVL
VTRVGKSTMTPKFKVALNPDVMPRLRVHDIYANALRGGKGEAHAGLQQRLQEARWFIKNIQQRFDTILRVSNAIAERQKN
FFIHGELAMRPMVLREIAEELGLHESTISRVTTNKYMSTPFGTFELKYFFGSGLETDSGNNASSTAVRALIKQFVASENP
KKPLSDNQLSEMLKEQGIECARRTVAKYREALRIAPTTLRKAL

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=99417 QMG15_RS12055 WP_281788785.1 2409463..2411034(-) (rpoN/rpoN1) [Limnohabitans sp. INBF002]
ATGAAGCAAGGCTTATCACTCCGCGTCTCCCAACATCTGGCGCTCACGCCGCAGTTACAGCAGTCGATCCGACTGTTGCA
GTTGTCCACCTTGGAGTTGAGCCAAGAGATTGAGCAAATGCTCGACGAGAACCCGTTTCTCGACAAAGAGTTTGAAGAAG
CGCCGCGCGAAGAGTTTGGCCTCGACAAAGCCGATGCCCCTACCCGTGACGAAGAAGTCGAGCCTGTCCGCGAAGTGCCA
TCGCTCGATGGCGGCATGTCTGAAATCAGCGTGGACAACACGGCCAGTGACACCGAACCCAGCGTGGATGGCGTGGCCGA
AAGCTGGGATGGTGATGGCAGCGTGGAGTTCTCAGCCGACGATTCTGAGTGGGGCGGCGACGCACCCGCCAGCAATAACA
ACAACACCGCCGACAGCGACACCGCAGACGCCACCGAGCTGGCGCGCATGCAAGAGTCGCTCACCTCGCATTTGCACCGT
CAAGCTTTGGCTTTGCGCTTGAGCCCTACTGACCAAGCGGCCTTGCGCTACTTGATTGAAAACCTCAACGACGACGGCTA
CCTCGAAGACACGCTGCGCAGCTTGGCCGAAGGTTTGGGTGGTGACGATGAAGAGGAAATTGAAGAACTCGAACACCGCT
TCCAAGTGGCCTTGTCGCTGCTGCAAAGCCTAGAACCTGTGGGTGTGGGCGCGCGTGATTTGGCCGAGTGTTTGACGCTG
CAACTCAAAGCCTTGACGCCCAAAGGCGAAGAAGCTTTGCAGATTCGCGACACCGCCATTCTCATGTGCAAGCAGCCCAT
GGAGATGTTGGCCAAGCGCGATTTCAAACGCTTGGCGGTCATCGTGGGTGACAGCGAAGCCAATGTCAAAGTGGCCATTG
CCCTGATTGGCCGTCTAGAGCCCAAGCCCGGCCGTCGTTTTGCCGATGTGGAGCGCCATGTGGTGGTGCCTGATGTGTTG
GTGACGCGCGTGGGCAAGTCGACCATGACGCCAAAATTCAAAGTGGCATTGAACCCCGATGTGATGCCTCGCTTACGTGT
GCACGACATCTACGCCAATGCCCTCAGAGGCGGCAAGGGCGAAGCGCATGCGGGCTTGCAACAGCGTTTGCAAGAAGCGC
GTTGGTTCATCAAGAACATCCAACAACGCTTTGACACCATCTTGCGTGTGAGCAATGCGATTGCTGAGCGCCAGAAAAAC
TTCTTCATCCACGGCGAACTCGCCATGCGCCCGATGGTGCTGCGCGAGATTGCCGAGGAGCTGGGGCTGCACGAATCCAC
CATCAGCCGCGTGACGACCAACAAATACATGAGCACCCCTTTTGGGACGTTTGAGCTCAAGTATTTCTTCGGTTCAGGGT
TGGAGACGGACAGCGGCAACAACGCCTCCAGCACGGCGGTGCGCGCGCTCATCAAGCAATTTGTGGCGAGCGAAAACCCC
AAAAAGCCGCTGTCGGATAATCAGCTCTCCGAAATGCTCAAAGAGCAAGGCATTGAGTGCGCCCGCCGCACCGTGGCCAA
ATACCGTGAGGCGCTGCGCATTGCGCCCACGACATTGCGCAAGGCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(146-351)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(366-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.531

100

0.505

Multiple sequence alignment