Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMG15_RS09460 Genome accession   NZ_AP027055
Coordinates   1907087..1908151 (+) Length   354 a.a.
NCBI ID   WP_281788393.1    Uniprot ID   -
Organism   Limnohabitans sp. INBF002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902087..1913151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG15_RS09425 (LINBF2_18730) - 1902926..1903546 (+) 621 WP_108357949.1 50S ribosomal protein L25/general stress protein Ctc -
  QMG15_RS09430 (LINBF2_18740) pth 1903614..1904288 (+) 675 WP_281788387.1 aminoacyl-tRNA hydrolase -
  QMG15_RS09435 (LINBF2_18750) - 1904248..1904796 (+) 549 WP_281788388.1 hypothetical protein -
  QMG15_RS09440 (LINBF2_18760) - 1904841..1905095 (-) 255 WP_281788389.1 YfhL family 4Fe-4S dicluster ferredoxin -
  QMG15_RS09445 (LINBF2_18770) - 1905171..1905902 (-) 732 WP_281788390.1 histidine phosphatase family protein -
  QMG15_RS09450 (LINBF2_18780) coaD 1905899..1906396 (-) 498 WP_281788391.1 pantetheine-phosphate adenylyltransferase -
  QMG15_RS09455 (LINBF2_18790) rsmD 1906433..1907056 (-) 624 WP_281788392.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QMG15_RS09460 (LINBF2_18800) pilA 1907087..1908151 (+) 1065 WP_281788393.1 signal recognition particle-docking protein FtsY Machinery gene
  QMG15_RS09465 (LINBF2_18810) - 1908157..1908381 (-) 225 WP_281788394.1 hypothetical protein -
  QMG15_RS09470 (LINBF2_18820) rpoH 1908543..1909466 (+) 924 WP_281788395.1 RNA polymerase sigma factor RpoH -
  QMG15_RS09475 (LINBF2_18830) - 1909540..1910136 (-) 597 WP_281788396.1 SCO family protein -
  QMG15_RS09480 (LINBF2_18840) cyoE 1910136..1911023 (-) 888 WP_281788397.1 heme o synthase -
  QMG15_RS09485 (LINBF2_18850) - 1911043..1912167 (-) 1125 WP_281788398.1 COX15/CtaA family protein -
  QMG15_RS09490 (LINBF2_18860) - 1912196..1912888 (-) 693 WP_281788399.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 36943.25 Da        Isoelectric Point: 6.8929

>NTDB_id=99414 QMG15_RS09460 WP_281788393.1 1907087..1908151(+) (pilA) [Limnohabitans sp. INBF002]
MFSFFKKKITGQPATEATGNSTATPANTSASAVPSEVTPQQMPAERPRASWMARLGQGLRRTGQTISTVFTGTKIDDALY
EELETALLMADAGVQATEYLLADLKKRVKDTSTTEPSAVKALLAASIAQLLKPLEKPLTIGAHKPTIIMVAGVNGAGKTT
SIGKLTRHLSDSGASVLLAAADTFRAAAREQLAVWATRNTVEIVSQEGGDPASVSFDAVTAGRARGKDVVLVDTAGRLPT
QLHLMEELKKIKRVVQKAEATGPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTAKGGVLAAIALWGQGRVA
AGGSAVPVYFIGVGEAVEDLETFNAQEFADALLG

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=99414 QMG15_RS09460 WP_281788393.1 1907087..1908151(+) (pilA) [Limnohabitans sp. INBF002]
ATGTTTAGCTTCTTCAAGAAAAAAATCACTGGCCAGCCTGCTACCGAAGCAACGGGCAACAGCACAGCCACACCTGCGAA
CACCTCGGCTAGCGCCGTCCCATCTGAAGTCACACCACAACAGATGCCAGCCGAGCGTCCCCGCGCGAGCTGGATGGCCC
GCTTAGGCCAAGGCCTGCGCCGCACCGGCCAAACCATCAGCACCGTGTTCACGGGCACCAAGATTGATGACGCGCTCTAT
GAAGAACTCGAAACTGCCCTGCTCATGGCCGATGCAGGCGTGCAAGCCACCGAGTATTTGCTGGCCGATTTGAAGAAACG
CGTCAAAGACACCAGCACCACCGAGCCCTCCGCCGTCAAGGCGCTCTTGGCCGCTTCAATTGCCCAGCTACTCAAGCCTT
TAGAAAAGCCCCTCACCATCGGCGCGCACAAGCCCACCATCATCATGGTGGCTGGCGTCAATGGCGCAGGCAAAACCACC
TCGATTGGCAAACTCACCCGCCATTTGAGCGACAGCGGTGCCTCGGTGCTGCTGGCTGCAGCCGACACCTTCCGCGCCGC
GGCACGTGAACAACTCGCCGTTTGGGCCACACGCAACACGGTGGAGATCGTCAGCCAAGAAGGCGGCGACCCGGCTTCTG
TGAGCTTTGATGCCGTCACCGCAGGCCGCGCACGCGGCAAAGACGTGGTGCTGGTCGACACCGCAGGCCGCCTGCCCACG
CAGCTGCACCTAATGGAAGAGCTGAAAAAAATCAAACGTGTGGTGCAAAAGGCCGAAGCAACTGGACCACACGAAGTGTT
GCTGGTGATTGACGGCAACACCGGCCAAAACGCCCTCGCGCAAGTGAAGGCGTTTGACGAAACGCTGGGTTTGACCGGCC
TCATCGTCACCAAACTCGACGGCACCGCCAAAGGTGGCGTGCTGGCCGCCATTGCGCTTTGGGGCCAAGGCCGTGTGGCA
GCGGGTGGCTCGGCCGTGCCGGTGTATTTCATCGGCGTGGGCGAAGCCGTGGAAGACCTGGAAACCTTCAACGCCCAAGA
GTTTGCCGACGCCCTCTTGGGCTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(145-354)

SRP54-type protein, helical bundle domain (SRP54_N)

(65-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

55.414

88.701

0.492

Multiple sequence alignment