Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AAH980_RS13960 Genome accession   NZ_CP154856
Coordinates   2967738..2969966 (-) Length   742 a.a.
NCBI ID   WP_284080446.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2962738..2974966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS13940 (AAH980_13940) - 2962923..2963882 (-) 960 WP_207692834.1 DnaJ C-terminal domain-containing protein -
  AAH980_RS13945 (AAH980_13945) - 2964032..2964643 (-) 612 WP_284080449.1 LysE family translocator -
  AAH980_RS13950 (AAH980_13950) - 2964780..2965655 (-) 876 WP_284080448.1 Hsp33 family molecular chaperone HslO -
  AAH980_RS13955 (AAH980_13955) - 2965821..2967662 (-) 1842 WP_004710778.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  AAH980_RS13960 (AAH980_13960) priA 2967738..2969966 (-) 2229 WP_284080446.1 primosomal protein N' Machinery gene
  AAH980_RS13965 (AAH980_13965) gspF 2970115..2971320 (+) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  AAH980_RS13970 (AAH980_13970) gspG 2971344..2971859 (+) 516 WP_017398156.1 type II secretion system major pseudopilin GspG -
  AAH980_RS13975 (AAH980_13975) - 2972125..2972469 (+) 345 WP_004698999.1 hypothetical protein -
  AAH980_RS13980 (AAH980_13980) - 2972530..2972790 (-) 261 WP_004710772.1 DUF2798 domain-containing protein -
  AAH980_RS13985 (AAH980_13985) - 2973031..2973369 (+) 339 WP_284080445.1 tRNA-binding protein -
  AAH980_RS13990 (AAH980_13990) lnt 2973371..2974930 (-) 1560 WP_284080444.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83907.76 Da        Isoelectric Point: 8.5645

>NTDB_id=994101 AAH980_RS13960 WP_284080446.1 2967738..2969966(-) (priA) [Acinetobacter nosocomialis strain Ab25]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDQDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=994101 AAH980_RS13960 WP_284080446.1 2967738..2969966(-) (priA) [Acinetobacter nosocomialis strain Ab25]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTCATGCAAACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCGTTTTTGTTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTGGTGTTAGTTCCTGAAATTGGTTT
GACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCCGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAGACTGGAAAGGCCTCTATTATTTTAGGGACGCGTTCAGCCATTTATACACCA
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAGCAAGAAGGCTTTCGTTACCATGC
GCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCGGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCACTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAACATGGTATTAGTCAGCCTTTAATCGAACAGATTAAAAATACCTTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGCCACCACTGCGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAAAAGAGTCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAGATCAAGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTCGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATCCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCAAAACAAACATTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAATCGAAAGATCGCGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGACCAATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTATTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCACCAAGACAGCATCAACTCCGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981

Multiple sequence alignment