Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AAH980_RS13300 Genome accession   NZ_CP154856
Coordinates   2823943..2825511 (-) Length   522 a.a.
NCBI ID   WP_006581173.1    Uniprot ID   A0AA36K808
Organism   Acinetobacter nosocomialis strain Ab25     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2818943..2830511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS13285 (AAH980_13285) gpmI 2819746..2821293 (+) 1548 WP_106479713.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AAH980_RS13290 (AAH980_13290) - 2821309..2822493 (+) 1185 WP_004883636.1 S41 family peptidase -
  AAH980_RS13295 (AAH980_13295) pilR 2822497..2823918 (-) 1422 WP_284081077.1 sigma-54 dependent transcriptional regulator Regulator
  AAH980_RS13300 (AAH980_13300) pilS 2823943..2825511 (-) 1569 WP_006581173.1 PAS domain-containing sensor histidine kinase Regulator
  AAH980_RS13305 (AAH980_13305) - 2825522..2826157 (-) 636 WP_000633799.1 response regulator -
  AAH980_RS13310 (AAH980_13310) pbpG 2826369..2827415 (+) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  AAH980_RS13315 (AAH980_13315) thrC 2827524..2828663 (-) 1140 WP_002048893.1 threonine synthase -
  AAH980_RS13320 (AAH980_13320) - 2828719..2830020 (-) 1302 WP_284081076.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59158.62 Da        Isoelectric Point: 6.7320

>NTDB_id=994095 AAH980_RS13300 WP_006581173.1 2823943..2825511(-) (pilS) [Acinetobacter nosocomialis strain Ab25]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLSYSIVSLVQLLCFKFIAIQTTRQ
LILFFIVDIICLSLLSFSAGEPNLQISLLYVIAIFTSAILLSARVSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEQGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKFGDLKENDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDLNNFINTLLDEDLSDVK
HSIQLKISDRSLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQIQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=994095 AAH980_RS13300 WP_006581173.1 2823943..2825511(-) (pilS) [Acinetobacter nosocomialis strain Ab25]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACTTTACTAAGCTATTCAATTGTAAGTCTTGTGCAATTGTTATGCTTTAAATTTATTGCTATCCAAACTACTCGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTAAGCCTCCTTTCATTTTCTGCTGGGGAGCCTAATTTACAAATTAG
TTTGCTGTATGTGATTGCTATCTTTACTTCGGCGATTTTGCTCAGTGCAAGAGTGTCTTTAGTTATTACCTTACTTGCGG
TTATTGCGGTTATTTACCAACGCTTCGTGGGTAGTTTATTTGACTACAACAATCTAAACACAATCGGTAATAGCGCTTTA
TTAGCTTTTTTATTTTTCGTTGTTCACGGGATTGGACAAATTGCAGTGCAGCGCTTTAAATTACTTGAAGCACTCACCTT
TCACCAGTCAATCGAGCTTTACCAGCTTCAAAATATTAACCGTTATATTTTAGAGCAAATTGAACAAGGCTATTTAGTTT
TAGACGAAAATTACGACATTGTTGTTAGCAATCCCGCTGCTTGTTCATTGCTTGGTATTCCTCCCCAGTTTGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATGCCGATTTATTTGAAATATTGAAGTTTGGCGACTTAAAAGAAAATGACCGATTTAT
TTTTGAGTCTCGGCTATCGGCTTATTCCATTAATATTAAAGTGCAGCATCTTTTAGTGCCACAACAAGCTCTGACACTAC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAGCAACTCAAACTTGCCGCTTTAGGGCAACTCTCGGCAAGT
ATTGCACATGAAATCCGCAATCCTCTGGCTGCAATTGTTCAAGCAAATGAGTTACTTAAAGATAGTGATCTCGAACAACA
AAATACTTTACGCCATATGATTGGCAAGCAAACTAAACGCATTGATAGTATTGTTCAGGACACCTTAGGACTTGCTCGTA
GCGAAAGAACACACCCTATTCAGATTGACTTAAACAATTTTATAAATACGCTACTCGATGAAGATTTATCTGACGTTAAG
CACTCAATTCAACTCAAAATTTCTGATCGTTCTTTAAAATTTTTATTTGACGAAAAACAACTAAGACAAGTCATGATCAA
TTTAGTGCGAAATGCTTTACGACACAATGCACCCGACTCACCGAATGTCATGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAATACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941

Multiple sequence alignment