Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AAH980_RS10340 Genome accession   NZ_CP154856
Coordinates   2198516..2199331 (-) Length   271 a.a.
NCBI ID   WP_004711686.1    Uniprot ID   A0A836Z055
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193516..2204331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS10330 (AAH980_10330) pilY2 2193837..2194319 (-) 483 WP_284080506.1 type IV pilin protein Machinery gene
  AAH980_RS10335 (AAH980_10335) pilY1 2194332..2198516 (-) 4185 WP_284080507.1 PilC/PilY family type IV pilus protein Machinery gene
  AAH980_RS10340 (AAH980_10340) pilX 2198516..2199331 (-) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AAH980_RS10345 (AAH980_10345) pilW 2199328..2200326 (-) 999 WP_017392604.1 PilW family protein Machinery gene
  AAH980_RS10350 (AAH980_10350) pilV 2200326..2200886 (-) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  AAH980_RS10355 (AAH980_10355) fimU 2200880..2201353 (-) 474 WP_016803890.1 GspH/FimT family pseudopilin Machinery gene
  AAH980_RS10360 (AAH980_10360) ispH 2201522..2202472 (-) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAH980_RS10365 (AAH980_10365) gmk 2202595..2203224 (+) 630 WP_002051739.1 guanylate kinase -
  AAH980_RS10370 (AAH980_10370) rpoZ 2203297..2203575 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AAH980_RS10375 (AAH980_10375) - 2203614..2203745 (+) 132 WP_102990545.1 hypothetical protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 28881.67 Da        Isoelectric Point: 6.6293

>NTDB_id=994078 AAH980_RS10340 WP_004711686.1 2198516..2199331(-) (pilX) [Acinetobacter nosocomialis strain Ab25]
MTHLRSKYIVQHHQKGATLIVVLIILLIVIAVGVLAIRVAIVSLKVATNSQIGQLNFQSSDTPIQLITQMDPTTLTNISN
VLGAALKENESHPGSEYNFCYKPVSTTVSFAQTRDASLLRAGTANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQIAVSIP
TDAVNDVPGSNLPRGTNASEGTALPKSMLSTQRIRVISTSFLPAYASTSMQTLQADCLSTNSAKISDNFDSSLSNKQTLA
DCLANHNVPFSTQIQEFNYTNKLTETMAPGS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=994078 AAH980_RS10340 WP_004711686.1 2198516..2199331(-) (pilX) [Acinetobacter nosocomialis strain Ab25]
ATGACCCATTTGAGAAGCAAATATATAGTCCAACATCATCAAAAAGGTGCGACGCTTATTGTTGTGCTTATTATTTTGTT
AATTGTTATTGCTGTGGGAGTTTTAGCCATTAGGGTGGCTATTGTTTCTTTGAAAGTTGCAACAAATAGCCAAATTGGCC
AATTAAATTTTCAATCTTCTGATACTCCTATACAGCTCATCACCCAGATGGATCCAACGACGCTTACAAATATTAGTAAT
GTGTTAGGAGCAGCACTTAAAGAAAATGAGAGTCATCCTGGATCGGAATATAATTTTTGCTATAAGCCAGTTTCGACCAC
TGTAAGTTTTGCCCAAACCCGAGATGCGAGTCTACTGCGAGCAGGAACTGCTAACAATGCCGTGGTAGAGGATGGAGGAG
TGGCTGGCTTTTGTGACCTGACCACTGATTATGGAAGTAATCGTCAAGCTGTCGTTACACAAATTGCTGTAAGCATTCCA
ACAGATGCCGTTAATGATGTTCCAGGTTCAAATTTACCACGCGGAACAAATGCGTCTGAAGGTACTGCTTTACCAAAGAG
TATGCTTTCTACACAACGCATTCGAGTGATTTCAACTTCTTTTTTACCTGCTTATGCTTCTACCTCAATGCAAACTTTGC
AAGCAGATTGTTTGAGTACAAATAGTGCCAAGATCAGCGATAACTTTGATAGCTCATTAAGTAATAAACAAACGTTAGCT
GATTGTTTGGCAAATCATAACGTACCTTTTAGTACTCAGATTCAAGAATTTAACTATACCAATAAACTTACTGAAACTAT
GGCGCCAGGTTCATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(15-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

82.353

100

0.827

Multiple sequence alignment