Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AAH980_RS09625 Genome accession   NZ_CP154856
Coordinates   2060887..2061771 (-) Length   294 a.a.
NCBI ID   WP_345795481.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain Ab25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055887..2066771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH980_RS09610 (AAH980_09610) miaB 2057735..2059186 (+) 1452 WP_151688320.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AAH980_RS09615 (AAH980_09615) - 2059224..2060312 (+) 1089 WP_002050786.1 PhoH family protein -
  AAH980_RS09620 (AAH980_09620) ybeY 2060322..2060798 (+) 477 WP_284081239.1 rRNA maturation RNase YbeY -
  AAH980_RS09625 (AAH980_09625) tonB2 2060887..2061771 (-) 885 WP_345795481.1 energy transducer TonB Machinery gene
  AAH980_RS09630 (AAH980_09630) - 2062005..2062676 (+) 672 WP_284081241.1 hypothetical protein -
  AAH980_RS09635 (AAH980_09635) - 2062841..2063554 (+) 714 WP_002050776.1 DUF3108 domain-containing protein -
  AAH980_RS09640 (AAH980_09640) - 2063626..2064201 (+) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  AAH980_RS09645 (AAH980_09645) wrbA 2064256..2064858 (-) 603 WP_006582614.1 NAD(P)H:quinone oxidoreductase -
  AAH980_RS09650 (AAH980_09650) - 2065139..2066386 (+) 1248 WP_002050751.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33645.48 Da        Isoelectric Point: 9.1346

>NTDB_id=994072 AAH980_RS09625 WP_345795481.1 2060887..2061771(-) (tonB2) [Acinetobacter nosocomialis strain Ab25]
MLKKRSLSIEPFHYWWEDRVFIVAIILAILLHTFILLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRTAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=994072 AAH980_RS09625 WP_345795481.1 2060887..2061771(-) (tonB2) [Acinetobacter nosocomialis strain Ab25]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGGAAGACCGAGTCTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTATACTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAACGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCCTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGGCATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGCCGTGGAGCACCGTTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGTTACGTATTGTACGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.898

100

0.949

Multiple sequence alignment