Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EQB47_RS05750 Genome accession   NZ_LR129844
Coordinates   1065221..1066291 (+) Length   356 a.a.
NCBI ID   WP_000817889.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-15 isolate 180-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060221..1071291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB47_RS12150 - 1061113..1061244 (+) 132 WP_088800136.1 LPXTG cell wall anchor domain-containing protein -
  EQB47_RS05735 ylqF 1061463..1062314 (+) 852 WP_000201299.1 ribosome biogenesis GTPase YlqF -
  EQB47_RS05740 - 1062301..1063080 (+) 780 WP_000201141.1 ribonuclease HII -
  EQB47_RS05745 - 1063096..1064646 (+) 1551 WP_127821348.1 ClC family H(+)/Cl(-) exchange transporter -
  EQB47_RS05750 xerS 1065221..1066291 (+) 1071 WP_000817889.1 tyrosine recombinase XerS Machinery gene
  EQB47_RS05755 - 1066356..1067345 (-) 990 WP_000873993.1 lipoate--protein ligase -
  EQB47_RS05760 lpdA 1067409..1069112 (-) 1704 WP_001162947.1 dihydrolipoyl dehydrogenase -
  EQB47_RS05765 - 1069158..1070201 (-) 1044 WP_000752696.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41173.27 Da        Isoelectric Point: 9.7561

>NTDB_id=994008 EQB47_RS05750 WP_000817889.1 1065221..1066291(+) (xerS) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLKSGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGIRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=994008 EQB47_RS05750 WP_000817889.1 1065221..1066291(+) (xerS) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTACCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGA
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAGGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTATTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATTCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.876

100

0.989