Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H346_RS0102695 Genome accession   NZ_AUKZ01000006
Coordinates   62348..63112 (+) Length   254 a.a.
NCBI ID   WP_027969728.1    Uniprot ID   -
Organism   Streptococcus castoreus DSM 17536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57348..68112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H346_RS0102675 - 57554..57829 (+) 276 WP_027969724.1 Veg family protein -
  H346_RS0102680 rpsD 58051..58662 (+) 612 WP_027969725.1 30S ribosomal protein S4 -
  H346_RS0102685 pcsB 59523..60683 (+) 1161 WP_027969726.1 peptidoglycan hydrolase PcsB -
  H346_RS0102690 - 60863..61825 (+) 963 WP_027969727.1 ribose-phosphate diphosphokinase -
  H346_RS0102695 recO 62348..63112 (+) 765 WP_027969728.1 DNA repair protein RecO Machinery gene
  H346_RS0102700 plsX 63218..64225 (+) 1008 WP_027969729.1 phosphate acyltransferase PlsX -
  H346_RS0102705 - 64218..64460 (+) 243 WP_027969730.1 phosphopantetheine-binding protein -
  H346_RS0102710 purC 64617..65342 (+) 726 WP_027969731.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29887.14 Da        Isoelectric Point: 6.1682

>NTDB_id=99400 H346_RS0102695 WP_027969728.1 62348..63112(+) (recO) [Streptococcus castoreus DSM 17536]
MQLNESFGIILYNRNYREDDKLVKIFTETAGKRMFFVKHISRSKVASVIQPLTVADFMLKINESGLSYIADYNQANRYRH
INEDLFRLSYASYVLALADAAIPDNESDPHLFAFLKKTLDLMEEGLDYEVLTNIFEVQLLERFGVKLNFHECAFCHCVGV
PFDFSYRYSGALCPKHYHEDDCRNHLDPNVIYLLDRFQTIQFDELRTISLNVDMKQKLRYFIDDLYHNYVGLHLKSKTFI
DDLGKWGDVMKRNE

Nucleotide


Download         Length: 765 bp        

>NTDB_id=99400 H346_RS0102695 WP_027969728.1 62348..63112(+) (recO) [Streptococcus castoreus DSM 17536]
ATGCAATTAAACGAATCATTTGGGATCATTCTCTATAATAGGAATTATCGTGAGGATGATAAATTGGTCAAAATATTTAC
TGAAACGGCAGGGAAACGAATGTTTTTCGTGAAACATATTAGTCGTTCAAAGGTTGCTTCTGTGATTCAACCTTTGACAG
TTGCTGATTTTATGTTAAAAATTAATGAATCAGGTCTTTCCTATATTGCTGATTACAATCAGGCGAATCGTTACCGTCAT
ATTAATGAAGACCTTTTTCGGTTGTCTTATGCTAGTTATGTATTGGCTTTAGCGGATGCGGCTATTCCAGATAATGAGTC
TGATCCTCACTTATTTGCTTTTTTAAAAAAGACTCTTGACTTAATGGAAGAAGGCTTAGATTATGAAGTTTTAACAAATA
TCTTTGAAGTTCAACTGTTAGAGCGTTTTGGGGTTAAACTTAACTTTCATGAGTGTGCCTTTTGTCATTGTGTAGGGGTT
CCGTTTGATTTTTCTTATCGTTATTCGGGAGCGCTTTGTCCTAAACATTACCATGAAGATGACTGTCGCAATCACTTGGA
TCCCAATGTTATTTATTTGTTGGATCGTTTTCAAACCATTCAGTTTGATGAATTGAGGACCATTTCTTTAAATGTGGACA
TGAAGCAGAAACTTCGCTATTTCATTGATGATTTGTACCATAATTATGTAGGTCTTCATCTGAAAAGCAAAACCTTTATT
GATGATTTGGGTAAATGGGGAGATGTTATGAAACGAAACGAATAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.249

98.031

0.61

Multiple sequence alignment