Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   G573_RS0100055 Genome accession   NZ_AUIN01000001
Coordinates   6198..6962 (+) Length   254 a.a.
NCBI ID   WP_027974816.1    Uniprot ID   -
Organism   Streptococcus devriesei DSM 19639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1198..11962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G573_RS0100035 mreD 1490..2011 (+) 522 WP_027974812.1 rod shape-determining protein MreD -
  G573_RS0100040 - 2108..3445 (+) 1338 WP_027974813.1 CHAP domain-containing protein -
  G573_RS0100045 - 3572..4540 (+) 969 WP_027974814.1 ribose-phosphate diphosphokinase -
  G573_RS0100050 - 5033..6208 (+) 1176 WP_027974815.1 pyridoxal phosphate-dependent aminotransferase -
  G573_RS0100055 recO 6198..6962 (+) 765 WP_027974816.1 DNA repair protein RecO Machinery gene
  G573_RS0100060 plsX 7063..8061 (+) 999 WP_027974817.1 phosphate acyltransferase PlsX -
  G573_RS0100065 acpP 8063..8308 (+) 246 WP_027974818.1 acyl carrier protein -
  G573_RS0100070 purC 8429..9136 (+) 708 WP_027974819.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29487.77 Da        Isoelectric Point: 5.9896

>NTDB_id=99394 G573_RS0100055 WP_027974816.1 6198..6962(+) (recO) [Streptococcus devriesei DSM 19639]
MQTKETRGLVLYNRHFRENDKLVKIFTESSGKHMFFVRHAGNSKLSSVIEPLTVANFILKINDTGLSYIEDYKEVSLFKE
INADIYKLAYASYLVALADAAIPDASFDASLFAFLVKTLELMNEGLDYEILTNIFEIQILERFGVQLNFHECCICHRVGL
AFDFSHRYSGLLCPEHYEKDEHRSHLDPNVPYLLDRFQSLRFEDLQTISVKADMKKKLRTFIDGLYEDYVGLHLKSKKFI
DDLDKWGSVMKNDD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=99394 G573_RS0100055 WP_027974816.1 6198..6962(+) (recO) [Streptococcus devriesei DSM 19639]
ATGCAGACTAAGGAAACCAGAGGCTTGGTGCTTTACAATCGTCATTTTCGTGAGAATGATAAGTTAGTTAAAATTTTTAC
GGAAAGTTCAGGCAAGCACATGTTTTTTGTACGCCATGCCGGTAATTCAAAGCTGTCTTCGGTTATTGAGCCGCTGACTG
TGGCTAATTTCATCTTAAAGATTAATGATACAGGGCTTTCTTATATAGAAGATTATAAGGAGGTCTCTCTTTTTAAGGAG
ATTAATGCTGATATCTATAAATTAGCCTATGCCAGCTACCTTGTTGCTTTGGCGGATGCCGCTATTCCGGATGCCAGTTT
TGATGCCAGTCTTTTTGCTTTTCTGGTTAAAACACTGGAGCTAATGAATGAGGGACTTGATTATGAAATCCTGACGAATA
TCTTTGAAATTCAGATTTTGGAACGTTTTGGTGTTCAGCTCAATTTCCATGAATGCTGTATTTGTCATCGTGTGGGGCTG
GCTTTTGATTTTTCTCACCGTTATTCCGGATTGCTGTGCCCCGAACATTATGAAAAAGATGAGCATCGCAGTCACTTAGA
TCCCAATGTGCCTTATTTGCTGGATCGTTTTCAGTCTCTGCGTTTTGAGGATTTACAAACAATTTCGGTGAAAGCTGATA
TGAAAAAGAAGCTTCGGACATTTATTGATGGTCTTTATGAAGATTATGTGGGCCTTCATTTAAAAAGCAAGAAATTTATT
GATGATTTGGATAAATGGGGCAGCGTGATGAAAAATGATGACTAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.032

99.606

0.638

Multiple sequence alignment