Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | QMG88_RS17075 | Genome accession | NZ_AP027052 |
| Coordinates | 3706809..3707396 (-) | Length | 195 a.a. |
| NCBI ID | WP_004405328.1 | Uniprot ID | - |
| Organism | Vibrio nigripulchritudo strain TUMSAT-V.nig3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3701809..3712396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG88_RS17055 (TUMSATVNIG3_33160) | aroB | 3702700..3703788 (-) | 1089 | WP_281827765.1 | 3-dehydroquinate synthase | - |
| QMG88_RS17060 (TUMSATVNIG3_33170) | aroK | 3703811..3704329 (-) | 519 | WP_004405322.1 | shikimate kinase AroK | - |
| QMG88_RS17065 (TUMSATVNIG3_33180) | pilQ | 3704519..3706267 (-) | 1749 | WP_281827768.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| QMG88_RS17070 (TUMSATVNIG3_33190) | pilP | 3706304..3706816 (-) | 513 | WP_022603536.1 | pilus assembly protein PilP | Machinery gene |
| QMG88_RS17075 (TUMSATVNIG3_33200) | pilO | 3706809..3707396 (-) | 588 | WP_004405328.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| QMG88_RS17080 (TUMSATVNIG3_33210) | pilN | 3707393..3707953 (-) | 561 | WP_004405329.1 | PilN domain-containing protein | Machinery gene |
| QMG88_RS17085 (TUMSATVNIG3_33220) | pilM | 3707946..3708962 (-) | 1017 | WP_004405331.1 | type IV pilus assembly protein PilM | Machinery gene |
| QMG88_RS17090 (TUMSATVNIG3_33230) | - | 3709108..3711606 (+) | 2499 | WP_281827772.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22736.13 Da Isoelectric Point: 4.6739
>NTDB_id=99391 QMG88_RS17075 WP_004405328.1 3706809..3707396(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
MIDWQELDFEDLPEWPLVAQILVLALLFLILQGVGSWFYLSPMKADLEQLKQKEQTLKSTLIIKTNKVAALPKLQEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGKKQNQEFLYRLPLNIELTGTYENIGKFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVTDE
Nucleotide
Download Length: 588 bp
>NTDB_id=99391 QMG88_RS17075 WP_004405328.1 3706809..3707396(-) (pilO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTGTT
GTTTCTGATTCTTCAAGGGGTGGGCAGTTGGTTTTATCTCTCTCCCATGAAAGCCGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACTCTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCATGGTTTGACTTTTACCCGCATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTTGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
ATGATCGATTGGCAAGAACTTGATTTCGAAGATTTACCGGAATGGCCGCTTGTTGCACAGATTTTAGTGCTGGCGCTGTT
GTTTCTGATTCTTCAAGGGGTGGGCAGTTGGTTTTATCTCTCTCCCATGAAAGCCGATCTTGAGCAGCTTAAGCAGAAAG
AGCAGACACTCAAAAGCACTCTGATTATCAAAACCAATAAGGTAGCGGCACTGCCAAAATTGCAGGAGCAGCTGGATGAA
CTCAATAGCCGTTATGACTATCTGTTAAAACAGCTTCCTGAACAGAAAGAGTTGGCAAGCATGCTGGCTTCTGTAAACGA
GCTGGGTATTCAGCATGGTTTGACTTTTACCCGCATCGATTGGGGTAAGAAGCAGAATCAGGAGTTTCTTTATCGTCTGC
CTCTGAATATTGAACTCACCGGAACTTACGAAAACATTGGTAAGTTCTCAGCGGCCATTGCCAACCTACCGCGGATCATA
AACTTCGACGATGTTGACTGGCAGCGGGTCAGTCAGGAAAGCAGCACCCTTCACTTCAGGGTAAGGGCGTACACCTATCA
GTTCAAACCGGAGGTGACCGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
68.718 |
100 |
0.687 |
| pilO | Vibrio campbellii strain DS40M4 |
66.316 |
97.436 |
0.646 |