Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EQB46_RS02940 Genome accession   NZ_LR129843
Coordinates   532053..532319 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-2 isolate 180-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 527053..537319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB46_RS02920 - 527316..527825 (+) 510 WP_000619952.1 GNAT family N-acetyltransferase -
  EQB46_RS02925 pheT 527902..530307 (+) 2406 WP_000961504.1 phenylalanine--tRNA ligase subunit beta -
  EQB46_RS02930 - 530375..531376 (-) 1002 WP_000597980.1 endonuclease/exonuclease/phosphatase family protein -
  EQB46_RS02935 - 531524..531927 (+) 404 Protein_557 helix-turn-helix domain-containing protein -
  EQB46_RS02940 HI0659 532053..532319 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  EQB46_RS02945 metE 532580..534829 (+) 2250 WP_000108202.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EQB46_RS02950 metF 534893..535759 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EQB46_RS12180 - 535941..536210 (-) 270 WP_001808932.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=993867 EQB46_RS02940 WP_001808618.1 532053..532319(+) (HI0659) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=993867 EQB46_RS02940 WP_001808618.1 532053..532319(+) (HI0659) [Streptococcus pneumoniae strain 180-2 isolate 180-2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534