Detailed information NTG0099384

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMG88_RS16045
• Genome accession: NZ_AP027052
• Coordinates: 3511752..3512738 (-)
• Length: 328 a.a.
• NCBI ID: WP_004401303.1
• Uniprot ID: A0AAV2VJY7
• Organism: Vibrio nigripulchritudo strain TUMSAT-V.nig3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3506752..3517738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG88_RS16035 (TUMSATVNIG3_31320)	-	3508078..3508695 (-)	618	WP_022549552.1	DUF1449 family protein	-
QMG88_RS16040 (TUMSATVNIG3_31330)	mutS	3509134..3511665 (+)	2532	WP_281830475.1	DNA mismatch repair protein MutS	-
QMG88_RS16045 (TUMSATVNIG3_31340)	rpoS	3511752..3512738 (-)	987	WP_004401303.1	RNA polymerase sigma factor RpoS	Regulator
QMG88_RS16050 (TUMSATVNIG3_31350)	nlpD	3512797..3513720 (-)	924	WP_038124047.1	murein hydrolase activator NlpD	-
QMG88_RS16055 (TUMSATVNIG3_31360)	-	3513736..3514362 (-)	627	WP_022597716.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMG88_RS16060 (TUMSATVNIG3_31370)	surE	3514363..3515109 (-)	747	WP_004401306.1	5'/3'-nucleotidase SurE	-
QMG88_RS16065 (TUMSATVNIG3_31380)	truD	3515137..3516180 (-)	1044	WP_281827611.1	tRNA pseudouridine(13) synthase TruD	-
QMG88_RS16070 (TUMSATVNIG3_31390)	ispF	3516184..3516660 (-)	477	WP_004401308.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMG88_RS16075 (TUMSATVNIG3_31400)	ispD	3516670..3517383 (-)	714	WP_281827613.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMG88_RS16080 (TUMSATVNIG3_31410)	ftsB	3517392..3517676 (-)	285	WP_004401310.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37786.74 Da
• Isoelectric Point: 4.6196

>NTDB_id=99384 QMG88_RS16045 WP_004401303.1 3511752..3512738(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDVNNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=99384 QMG88_RS16045 WP_004401303.1 3511752..3512738(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCTGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTTGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTGGCACTGCTCGATCTGATCGAAGAAGGTAACCTAGGACTGATCCGTGCAGTTGAGAAATTTGATCCTGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGCACTATT
CGTTTGCCCATACACGTAGTGAAAGAGCTGAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAAAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCTCAGCAACTTGATAAGCCCGTTGATGATGTCAGCAAAATGCTTCGTCTGAATGAAAGAG
TCAGTTCCGTGGACACCCCAATCGGTGGTGAAAGCGAGAAAGCGCTTCTTGATATCATTCCAGACGTCAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGACTGGCTGGATGATTTGAATCCTAAGCAGAAAGA
AGTACTTGCACGCCGTTTTGGTCTTCTGGGGTATGAACCTTCAACACTGGAAGAAGTGGGTCGTGAGATCAATTTGACTC
GAGAGCGTGTACGTCAGATCCAAGTAGAAGGTCTTCGTCGACTTCGTGAGATCCTGGTGAAACAGGGTCTGAACATGGAA
TCATTGTTCAACGTTGAAAATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.284	100	0.851