Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   TPELB_RS03845 Genome accession   NZ_CP154622
Coordinates   738228..739181 (+) Length   317 a.a.
NCBI ID   WP_206925733.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain ELB     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733228..744181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPELB_RS03825 (TPELB_07680) - 733523..734890 (+) 1368 WP_343338582.1 MATE family efflux transporter -
  TPELB_RS03830 (TPELB_07690) - 734994..736445 (+) 1452 WP_206925735.1 DEAD/DEAH box helicase -
  TPELB_RS03835 (TPELB_07700) - 736580..737467 (+) 888 WP_206925734.1 MerR family transcriptional regulator -
  TPELB_RS03840 (TPELB_07710) - 737513..738019 (+) 507 WP_245227444.1 metallophosphoesterase family protein -
  TPELB_RS03845 (TPELB_07720) ceuB 738228..739181 (+) 954 WP_206925733.1 ABC transporter permease Machinery gene
  TPELB_RS03850 (TPELB_07730) - 739171..740178 (+) 1008 WP_343338583.1 iron chelate uptake ABC transporter family permease subunit -
  TPELB_RS03855 (TPELB_07740) - 740175..740930 (+) 756 WP_206925731.1 ATP-binding cassette domain-containing protein -
  TPELB_RS03860 (TPELB_07750) - 741025..741978 (+) 954 WP_074920039.1 ABC transporter substrate-binding protein -
  TPELB_RS03865 (TPELB_07760) - 742165..742890 (+) 726 WP_343338584.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34533.60 Da        Isoelectric Point: 9.1683

>NTDB_id=993811 TPELB_RS03845 WP_206925733.1 738228..739181(+) (ceuB) [Terrisporobacter petrolearius strain ELB]
MKKRYLIIMLIGLSLVSIFLGAKNINIMNVLNGDQDAIHLMVVSRLPRLISILMAGSAMSICGLIMQQISQNKFVSPTTG
ATIDSAQLGIVTAMVLIPGATIMQKAMISFVFALAGTLMFMTFLRNLKVKSVIFVPLVGIMFGNIIGSITTYIGYEFEIM
QNVGSWMQGNFSMILKGNYELLYLAIPLMIVAFLFAHKFTVAGMGEDFATNLGLDYKKIVNLGLVIVSIVTVCVVITAGE
IPYIGLIVPNIVSLYKGDNVHENIWDTALFGAVFVLVCDIAARAIIYPYELSVGLTVGVIGSGIFLYLILRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=993811 TPELB_RS03845 WP_206925733.1 738228..739181(+) (ceuB) [Terrisporobacter petrolearius strain ELB]
ATGAAAAAAAGATATTTAATCATAATGTTAATTGGATTATCTTTAGTTTCTATATTTTTAGGAGCTAAAAATATAAATAT
AATGAATGTTTTAAATGGCGATCAAGATGCCATACATCTTATGGTGGTAAGTAGGCTTCCAAGATTAATAAGCATATTAA
TGGCAGGAAGTGCTATGAGTATATGTGGGTTAATAATGCAACAAATAAGTCAAAATAAATTTGTTTCTCCAACAACAGGA
GCCACAATAGATTCAGCTCAGTTGGGAATAGTTACAGCGATGGTTCTTATACCAGGAGCAACAATAATGCAAAAAGCTAT
GATATCTTTTGTATTTGCTTTGGCTGGAACATTAATGTTTATGACATTTTTAAGAAATTTAAAAGTTAAAAGTGTAATAT
TTGTACCACTAGTTGGTATAATGTTTGGAAATATAATAGGATCTATAACAACATACATAGGATATGAATTTGAGATAATG
CAAAATGTTGGCTCTTGGATGCAAGGTAACTTCTCCATGATTTTAAAGGGAAATTATGAATTGTTATACTTAGCTATACC
CCTTATGATTGTAGCGTTTTTATTTGCTCATAAATTTACAGTGGCAGGTATGGGAGAAGACTTTGCAACAAACCTAGGTC
TTGATTACAAAAAAATAGTTAATCTTGGTCTTGTAATAGTTTCAATAGTTACAGTATGTGTAGTAATAACAGCAGGAGAA
ATTCCTTATATAGGATTAATTGTTCCAAATATAGTTTCTTTGTATAAAGGTGATAATGTTCATGAAAATATATGGGATAC
AGCCTTATTTGGAGCAGTATTTGTTTTAGTTTGTGATATAGCAGCTAGAGCAATAATTTATCCATATGAACTTTCTGTTG
GACTTACAGTTGGGGTTATAGGAAGTGGAATATTCCTTTATTTAATATTAAGGAGGAAGTCATATGCAAGTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483

Multiple sequence alignment