Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG88_RS15900 Genome accession   NZ_AP027052
Coordinates   3480463..3480981 (-) Length   172 a.a.
NCBI ID   WP_004408881.1    Uniprot ID   A0AAV2VQN8
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3475463..3485981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS15885 (TUMSATVNIG3_31100) - 3476827..3477621 (+) 795 WP_004408885.1 inner membrane protein YpjD -
  QMG88_RS15890 (TUMSATVNIG3_31110) - 3477718..3478980 (+) 1263 WP_004408884.1 CNNM domain-containing protein -
  QMG88_RS15895 (TUMSATVNIG3_31120) - 3479184..3480413 (+) 1230 WP_281827596.1 YbiU family protein -
  QMG88_RS15900 (TUMSATVNIG3_31130) luxS 3480463..3480981 (-) 519 WP_004408881.1 S-ribosylhomocysteine lyase Regulator
  QMG88_RS15905 (TUMSATVNIG3_31140) - 3481006..3481611 (-) 606 WP_281827598.1 hypothetical protein -
  QMG88_RS15910 (TUMSATVNIG3_31150) gshA 3481617..3483185 (-) 1569 WP_281827599.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18892.68 Da        Isoelectric Point: 4.5235

>NTDB_id=99381 QMG88_RS15900 WP_004408881.1 3480463..3480981(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSETGIHTLEHLYAGFMRKHLNGADIEIIDISP
MGCRTGFYMSLIGTPVESQVAEAWLAAMQDVLKVESQDQIPELNEYQCGTAAMHSLDEAKEIATAIIEAGISVNKNEDLA
LPESMLKELSVK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=99381 QMG88_RS15900 WP_004408881.1 3480463..3480981(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGCCATTACTAGATAGTTTTACCGTTGATCACACCAAGATGAATGCTCCTGCCGTTCGTGTGGCTAAAACCATGCAAAC
GCCAAAAGGGGACACGATTACCGTTTTTGATCTTCGTTTTACGGCACCTAACAAAGACATTCTGTCTGAGACGGGCATCC
ATACACTTGAGCACCTGTACGCAGGTTTCATGCGTAAACACCTGAATGGCGCTGATATCGAAATTATCGATATATCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGTCTTATCGGGACACCTGTTGAATCTCAAGTGGCAGAAGCATGGCTTGCAGC
TATGCAAGATGTGTTAAAAGTTGAAAGCCAGGATCAGATCCCAGAGCTGAACGAATACCAGTGCGGTACTGCTGCGATGC
ACTCTCTGGATGAAGCAAAAGAGATTGCAACAGCAATTATCGAAGCAGGAATTTCGGTAAACAAAAATGAAGATCTTGCA
CTACCAGAATCTATGCTGAAAGAGCTGAGCGTGAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment