Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   TPHSE_RS12145 Genome accession   NZ_CP154619
Coordinates   2446326..2448095 (-) Length   589 a.a.
NCBI ID   WP_343342662.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain HSE     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441326..2453095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPHSE_RS12130 (TPHSE_24340) - 2442282..2442779 (-) 498 WP_343342659.1 GNAT family N-acetyltransferase -
  TPHSE_RS12135 (TPHSE_24350) - 2442956..2444296 (-) 1341 WP_343342660.1 protein kinase -
  TPHSE_RS12140 (TPHSE_24360) rcrQ 2444570..2446333 (-) 1764 WP_343342661.1 ABC transporter ATP-binding protein Regulator
  TPHSE_RS12145 (TPHSE_24370) rcrP 2446326..2448095 (-) 1770 WP_343342662.1 ABC transporter ATP-binding protein Regulator
  TPHSE_RS12150 (TPHSE_24380) - 2448263..2448940 (+) 678 WP_343342663.1 response regulator transcription factor -
  TPHSE_RS12155 (TPHSE_24390) - 2448930..2449988 (+) 1059 WP_343342664.1 HAMP domain-containing sensor histidine kinase -
  TPHSE_RS12160 (TPHSE_24400) - 2450034..2451431 (-) 1398 WP_343342665.1 protein kinase family protein -
  TPHSE_RS12165 (TPHSE_24410) - 2451551..2452138 (-) 588 WP_343342666.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66124.01 Da        Isoelectric Point: 9.0892

>NTDB_id=993798 TPHSE_RS12145 WP_343342662.1 2446326..2448095(-) (rcrP) [Terrisporobacter petrolearius strain HSE]
MLKILKYLTKKDWIFVLFSFLFVVVQVYLDLRLPDYMSEITRLVQTPNSEMREILSAGSYMLLCAFGSLIGAFIVGYFAA
QIASNLSWKLRSSVYDKIEGFSMAEINKFSTPSLITRSTNDITQIQNIVAMGLQLIIKAPITAVWAVCKILDKGWQWSSA
TGGAILVLVLIILVIMIFALPRFKKIQKLTDRLNLVTRENLTGIRVVRAYNAENYQNSKFENVNEEITNNNLVINRVMSI
LQPGMMFVLNGLTLAIYWIGAYLINDANIMDKMNLFSDMIVFSSYSMQVIMAFMMLTMIFIMMPRASVSAKRILEVLNTK
ESIVDGDGKFEKTSKIGEIEFKNVSFKYPDSEGSDYVLRDINFTAKMGETVAIIGSTGSGKTSLINLIPRFYDVTEGEVL
VNGVNVKKYKQKELNNLLGYVHQKAVLFSGDITSNVAYGNNGKENYSEFDVKRAVKIAQGTEFVENMENTYNASISQGGS
NVSGGQKQRLSIARAICKKAEIYIFDDSFSALDYKTDRKLRSVLKHEISNATNLIVAQRIGTIIDADKIIVLDEGQIAGM
GTHHELMKKCRVYQEIAYSQLSKEELANA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=993798 TPHSE_RS12145 WP_343342662.1 2446326..2448095(-) (rcrP) [Terrisporobacter petrolearius strain HSE]
ATGTTAAAGATATTAAAATATTTAACAAAAAAAGACTGGATTTTTGTACTTTTCAGCTTTTTATTTGTAGTAGTGCAAGT
ATATCTTGATTTAAGATTACCAGATTATATGTCAGAAATAACAAGGTTAGTTCAGACACCAAATAGTGAAATGAGGGAAA
TATTAAGTGCTGGTAGTTATATGCTACTGTGTGCCTTTGGTAGTTTAATAGGAGCTTTTATAGTAGGTTATTTTGCAGCC
CAAATAGCTTCGAATTTATCATGGAAACTTCGTTCAAGTGTATACGATAAAATTGAAGGATTTTCAATGGCTGAAATTAA
TAAATTTTCTACACCTAGTTTAATAACACGCTCAACTAATGATATTACTCAAATTCAAAATATTGTTGCTATGGGTCTTC
AATTAATAATAAAAGCTCCCATTACAGCAGTTTGGGCAGTTTGTAAAATTCTAGATAAAGGATGGCAATGGAGCAGCGCC
ACTGGTGGAGCCATATTAGTTTTAGTATTAATAATCTTAGTAATAATGATATTTGCCTTACCTAGATTTAAAAAGATTCA
AAAATTAACTGACAGACTTAACTTAGTAACAAGAGAAAATTTAACAGGAATACGTGTAGTTCGTGCATATAATGCAGAAA
ACTATCAAAATAGCAAATTTGAAAATGTAAATGAAGAGATAACTAACAACAATTTAGTAATAAATAGAGTTATGTCAATA
TTGCAACCAGGAATGATGTTTGTTTTGAATGGATTAACACTTGCCATATACTGGATAGGTGCTTATTTAATAAATGATGC
GAATATTATGGATAAAATGAATTTATTTAGTGATATGATAGTCTTCTCATCTTATTCAATGCAGGTAATAATGGCATTTA
TGATGTTAACAATGATATTTATAATGATGCCAAGAGCTTCAGTTTCAGCTAAACGTATACTTGAAGTATTAAATACAAAG
GAAAGTATAGTTGATGGAGATGGAAAATTTGAAAAGACTTCAAAAATTGGAGAAATAGAATTCAAAAATGTTAGCTTTAA
ATATCCTGACTCAGAAGGTTCAGACTATGTGCTTCGTGATATAAACTTTACTGCTAAAATGGGTGAAACAGTTGCCATAA
TTGGATCCACAGGAAGTGGGAAAACTTCTTTAATAAATTTAATACCAAGATTTTATGATGTTACAGAAGGTGAAGTACTA
GTAAATGGAGTTAATGTAAAAAAATATAAACAAAAGGAACTAAACAATCTTTTAGGATACGTTCATCAAAAGGCAGTGTT
ATTTTCAGGAGATATAACTTCAAACGTAGCTTATGGAAATAATGGCAAGGAAAATTACTCTGAGTTCGACGTGAAAAGAG
CTGTAAAAATAGCCCAAGGAACTGAATTTGTTGAGAATATGGAAAACACCTACAATGCAAGTATTTCCCAAGGAGGGAGC
AACGTATCAGGAGGACAAAAACAAAGATTATCTATAGCAAGAGCAATATGTAAAAAAGCTGAAATATACATATTTGACGA
TTCTTTTTCAGCACTTGACTATAAAACTGACAGAAAACTTAGATCTGTATTAAAACATGAAATATCAAATGCTACAAATT
TAATAGTAGCACAACGTATAGGTACTATAATCGATGCAGACAAAATAATAGTTCTAGATGAAGGACAAATAGCAGGTATG
GGAACTCACCATGAACTTATGAAAAAATGTAGAGTTTATCAGGAAATAGCATATTCTCAGCTTTCAAAGGAGGAATTAGC
CAATGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-508)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.582

100

0.516

Multiple sequence alignment