Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TPHSE_RS12140 Genome accession   NZ_CP154619
Coordinates   2444570..2446333 (-) Length   587 a.a.
NCBI ID   WP_343342661.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain HSE     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439570..2451333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPHSE_RS12115 (TPHSE_24310) - 2439701..2440159 (-) 459 WP_343342656.1 hypothetical protein -
  TPHSE_RS12120 (TPHSE_24320) - 2440292..2440834 (-) 543 WP_343342657.1 NADH peroxidase -
  TPHSE_RS12125 (TPHSE_24330) - 2440949..2442181 (-) 1233 WP_343342658.1 VanW family protein -
  TPHSE_RS12130 (TPHSE_24340) - 2442282..2442779 (-) 498 WP_343342659.1 GNAT family N-acetyltransferase -
  TPHSE_RS12135 (TPHSE_24350) - 2442956..2444296 (-) 1341 WP_343342660.1 protein kinase -
  TPHSE_RS12140 (TPHSE_24360) rcrQ 2444570..2446333 (-) 1764 WP_343342661.1 ABC transporter ATP-binding protein Regulator
  TPHSE_RS12145 (TPHSE_24370) rcrP 2446326..2448095 (-) 1770 WP_343342662.1 ABC transporter ATP-binding protein Regulator
  TPHSE_RS12150 (TPHSE_24380) - 2448263..2448940 (+) 678 WP_343342663.1 response regulator transcription factor -
  TPHSE_RS12155 (TPHSE_24390) - 2448930..2449988 (+) 1059 WP_343342664.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64675.82 Da        Isoelectric Point: 5.8884

>NTDB_id=993797 TPHSE_RS12140 WP_343342661.1 2444570..2446333(-) (rcrQ) [Terrisporobacter petrolearius strain HSE]
MLNNNKQKSQGSLGNLLAYMKKYSFALVLAFIFAIGGSIITVISPDKLSEVTDLITKGIVAGINMDKISSICLTLAGLYG
ISVVLSYLQGFIMATVTQKTTKELRSDISNKMNKLPLTYFDKTTVGDVLSRMTNDVDTIGQTLNQSIGTLVSAISLLLGS
LYMMTTTNITLTITAVVSTIIGFGLMMLIISKSQKHFVNQQRYLGEINGHIEEAYTGHSVMKVYNAGEETNNKFKILNDN
LKQSAWKSQFISGLMMPLMSFIGNFGYVAVCVVGAVLAFNDKISFGVIVAFMMYIRFFTQPLAQFAQAATSLQSTSAACK
RVFEFLQEEEMEDESNKNISLENVEGHVKFEHVKFGYDKDKLIIKDFSADIKSGQKVAIVGPTGAGKTTLVNLLMKFYDV
NSGTIKIDEVPIQSLSREKVHDLFCMVLQDTWLFEGTIRENITYNKEDVSESVIVSACKAVGIDHFIRTLPEGYDTVLDD
NTNLSAGQKQLITIARAMVKNAPLLILDEATSSVDTRTELLIQEAMDKLTVGKTSFVIAHRLSTIKNADVILVMKDGDII
ESGNHEELLSVAGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=993797 TPHSE_RS12140 WP_343342661.1 2444570..2446333(-) (rcrQ) [Terrisporobacter petrolearius strain HSE]
ATGCTTAATAATAATAAACAAAAGTCACAAGGAAGCTTAGGCAACTTATTGGCATATATGAAAAAATATAGTTTTGCATT
AGTTTTAGCCTTTATATTTGCCATAGGTGGATCAATAATAACAGTTATTAGTCCAGACAAATTAAGTGAAGTTACAGATT
TGATTACAAAAGGAATAGTAGCTGGAATTAACATGGATAAGATATCTAGTATATGTTTAACATTGGCAGGATTATATGGT
ATTAGTGTTGTGTTATCTTACTTGCAAGGTTTTATAATGGCAACAGTAACACAAAAGACTACTAAAGAGTTAAGAAGTGA
TATATCTAATAAAATGAATAAATTACCATTAACATATTTTGATAAAACTACTGTTGGTGATGTTCTAAGTCGTATGACTA
ATGATGTGGATACAATAGGTCAAACTTTAAATCAAAGTATTGGGACTTTAGTAAGTGCCATATCCTTATTATTAGGCTCC
TTGTATATGATGACAACTACAAACATCACTTTAACAATTACAGCAGTAGTATCTACAATAATTGGTTTTGGATTAATGAT
GTTAATAATATCAAAATCTCAAAAACATTTTGTAAATCAACAACGTTATCTTGGCGAAATAAATGGACATATAGAAGAAG
CTTATACTGGTCATAGTGTAATGAAAGTATATAATGCAGGTGAAGAAACAAATAATAAGTTTAAAATATTAAATGATAAT
CTTAAACAAAGTGCATGGAAATCACAATTTATATCAGGTTTAATGATGCCTTTAATGTCGTTTATAGGTAACTTTGGATA
TGTGGCAGTTTGTGTTGTAGGTGCAGTCCTAGCTTTCAATGATAAAATAAGTTTTGGCGTAATAGTAGCATTTATGATGT
ATATTAGATTTTTTACACAACCCCTTGCTCAATTTGCACAAGCAGCCACTTCTCTACAGTCAACATCAGCTGCATGTAAA
CGAGTATTTGAGTTTTTACAAGAAGAAGAAATGGAAGATGAAAGCAATAAAAACATATCTTTAGAAAATGTAGAAGGGCA
TGTTAAATTTGAACATGTTAAATTTGGATATGATAAAGATAAATTAATAATAAAAGATTTCTCTGCTGATATTAAATCAG
GACAAAAAGTTGCAATAGTAGGACCAACAGGAGCAGGTAAAACTACTTTAGTAAACTTATTAATGAAGTTCTACGATGTA
AATAGCGGAACAATAAAAATAGATGAAGTACCAATACAAAGTCTAAGTAGAGAAAAGGTACATGATTTATTTTGCATGGT
ACTTCAAGACACATGGTTATTTGAAGGAACAATTAGAGAAAATATAACTTACAATAAAGAAGATGTGTCAGAATCAGTTA
TAGTATCTGCTTGTAAAGCTGTTGGAATAGATCATTTTATAAGAACTTTGCCTGAAGGGTATGACACAGTATTAGATGAT
AACACCAATTTATCAGCTGGACAAAAACAGCTAATTACTATAGCCAGAGCAATGGTGAAAAATGCACCACTATTAATACT
AGATGAGGCAACAAGTTCTGTAGATACTCGTACAGAATTATTAATACAAGAGGCTATGGATAAATTAACAGTAGGAAAAA
CTTCATTTGTTATAGCTCATAGATTATCAACTATAAAAAATGCTGATGTAATTTTAGTTATGAAAGATGGAGATATTATA
GAAAGTGGAAATCATGAAGAACTTTTAAGTGTAGCTGGATTTTATGCAGAGCTTTATAATAGCCAATTTGAAAAAGCAAG
TTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(27-302)

ABC transporter (ABC_tran)

(365-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.722

98.637

0.579

Multiple sequence alignment