Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EQB42_RS02815 Genome accession   NZ_LR129841
Coordinates   525223..525489 (+) Length   88 a.a.
NCBI ID   WP_001852152.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 947 isolate 947     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520223..530489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB42_RS02795 - 520435..520944 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  EQB42_RS02800 pheT 521021..523426 (+) 2406 WP_000961567.1 phenylalanine--tRNA ligase subunit beta -
  EQB42_RS02805 - 523494..524494 (-) 1001 Protein_522 endonuclease/exonuclease/phosphatase family protein -
  EQB42_RS02810 - 524650..525138 (+) 489 Protein_523 transposase -
  EQB42_RS02815 HI0659 525223..525489 (+) 267 WP_001852152.1 helix-turn-helix domain-containing protein Machinery gene
  EQB42_RS02820 metE 525749..527998 (+) 2250 WP_000108189.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EQB42_RS02825 metF 528062..528928 (+) 867 WP_000089981.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9558.11 Da        Isoelectric Point: 4.8274

>NTDB_id=993752 EQB42_RS02815 WP_001852152.1 525223..525489(+) (HI0659) [Streptococcus pneumoniae strain 947 isolate 947]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=993752 EQB42_RS02815 WP_001852152.1 525223..525489(+) (HI0659) [Streptococcus pneumoniae strain 947 isolate 947]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

62.338

87.5

0.545