Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QMG88_RS10130 Genome accession   NZ_AP027052
Coordinates   2189031..2190455 (+) Length   474 a.a.
NCBI ID   WP_281826153.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2184031..2195455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS10115 (TUMSATVNIG3_19680) - 2186188..2186568 (-) 381 WP_004400064.1 hypothetical protein -
  QMG88_RS10120 (TUMSATVNIG3_19690) - 2186580..2187854 (-) 1275 WP_281826150.1 AarF/ABC1/UbiB kinase family protein -
  QMG88_RS10125 (TUMSATVNIG3_19700) - 2187860..2188573 (-) 714 WP_281826151.1 TetR family transcriptional regulator -
  QMG88_RS10130 (TUMSATVNIG3_19710) sbcB 2189031..2190455 (+) 1425 WP_281826153.1 exodeoxyribonuclease I Machinery gene
  QMG88_RS10135 (TUMSATVNIG3_19720) - 2190466..2190828 (+) 363 WP_004400117.1 CidA/LrgA family protein -
  QMG88_RS10140 (TUMSATVNIG3_19730) - 2190828..2191502 (+) 675 WP_004400118.1 LrgB family protein -
  QMG88_RS10145 (TUMSATVNIG3_19740) cdd 2191724..2192611 (+) 888 WP_281826157.1 cytidine deaminase -
  QMG88_RS10150 (TUMSATVNIG3_19750) purT 2192760..2193935 (+) 1176 WP_281826158.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  QMG88_RS10155 (TUMSATVNIG3_19760) - 2193980..2194621 (-) 642 WP_281826159.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54417.75 Da        Isoelectric Point: 5.0843

>NTDB_id=99371 QMG88_RS10130 WP_281826153.1 2189031..2190455(+) (sbcB) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MSKENQPTLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGISPQTAVSKGLPEP
EFIKKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFYDPYAWSWQHGNSRWDLLDVMRACHALRPEGVNWPQRDDGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKEAQPKLFDYLFSMRHKKKLNELVDIVNMTPLMHVSGMLGAECSY
TSWMVPVAWHPTNQNAVVMINLAMDPSPLIELDSAQLKERLYTKRDQLSEGELPVPIKLVHLNKCPVLAPAKTLTAENAE
TIGIDREQCLKNLAIIRQHPEIREKLIELYQNQNEYDVDPDVDTQLYNGFFSSADKTAMEIIREKSPEQLAGLDLNVKDA
RIAPLLFRYRARHYPWTLDETEQAKWAAHCREYFESNLPEYMQNLENLVHEHDGDEKKIALLKSVYHYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=99371 QMG88_RS10130 WP_281826153.1 2189031..2190455(+) (sbcB) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGTCAAAAGAAAACCAGCCGACTCTGTTCTTTTTCGATTACGAAACCTGGGGGACCAGCCCCGCTAAAGATCGACCTAG
CCAGTTTGCCGGAGTTCGCACAGACATGGATCTGAATATCATAGGCGAACCGCTTGTCATTTATTGCCAGCCTCCCTCTG
ATTACCTCCCTTCACCTGAAGCCGCGCTTATTACTGGAATCTCTCCACAAACAGCTGTGAGTAAAGGGCTACCCGAGCCT
GAGTTCATTAAAAAGATTCACGATGAACTTTCTACGCCAAATACCACAAGCCTTGGTTACAACAGCATTCGATTTGATGA
CGAAGTCTCTCGCTATACTCTTTATCGAAACTTTTATGACCCGTATGCCTGGAGCTGGCAGCACGGAAACTCTCGATGGG
ATTTGCTGGACGTAATGCGAGCCTGTCACGCACTTCGACCTGAAGGTGTGAACTGGCCTCAACGTGATGATGGCTATACA
AGCTTTAAGCTAGAGCATCTGTCTGTTGCCAATGGCATAGAACACGAAAATGCACACGATGCGATGGCGGATGTGATTGC
GACCATCGAAATGGCTAAGAAGGTTAAGGAAGCGCAACCAAAGCTGTTCGATTACCTATTCAGCATGCGCCACAAAAAGA
AACTCAATGAGCTTGTCGATATCGTCAACATGACACCTTTGATGCACGTCTCCGGTATGTTGGGTGCAGAATGCTCCTAC
ACTTCGTGGATGGTTCCTGTCGCGTGGCACCCAACCAATCAAAATGCTGTCGTCATGATCAATCTTGCCATGGACCCAAG
CCCGCTTATTGAGCTGGATTCCGCACAGCTGAAAGAACGTCTCTATACTAAAAGAGATCAGCTTTCCGAAGGGGAACTTC
CAGTACCGATAAAACTCGTTCACCTAAACAAATGCCCTGTCCTAGCACCTGCAAAAACGTTAACCGCGGAAAACGCAGAA
ACAATAGGTATTGATCGCGAGCAGTGCTTAAAAAACCTTGCCATAATTCGCCAACACCCTGAAATTAGGGAAAAGCTTAT
TGAGCTTTACCAGAATCAAAACGAGTATGACGTAGACCCAGATGTCGACACTCAGCTCTATAACGGATTCTTCTCTTCGG
CAGACAAGACAGCCATGGAGATCATTCGAGAGAAATCACCTGAACAACTCGCTGGCTTGGATTTGAATGTAAAAGACGCA
CGAATCGCACCTCTGCTTTTCCGCTATCGTGCTCGTCACTATCCATGGACTTTGGACGAAACGGAACAAGCGAAATGGGC
AGCACATTGTCGTGAGTATTTTGAAAGCAACTTACCGGAATACATGCAGAATCTGGAAAACTTAGTTCACGAACATGACG
GTGACGAGAAAAAGATTGCCTTGCTAAAATCCGTATACCATTACGTTGAAAAATTGGTCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.264

99.789

0.751

Multiple sequence alignment