Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QMG88_RS09840 Genome accession   NZ_AP027052
Coordinates   2114229..2115734 (+) Length   501 a.a.
NCBI ID   WP_281826073.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109229..2120734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS09825 (TUMSATVNIG3_19090) - 2109440..2110219 (+) 780 WP_004408138.1 chromosome partitioning ATPase -
  QMG88_RS09830 (TUMSATVNIG3_19100) - 2110216..2111751 (+) 1536 WP_281826069.1 SpoIIE family protein phosphatase -
  QMG88_RS09835 (TUMSATVNIG3_19110) - 2111761..2114034 (+) 2274 WP_281826071.1 response regulator -
  QMG88_RS09840 (TUMSATVNIG3_19120) luxO 2114229..2115734 (+) 1506 WP_281826073.1 sigma-54 dependent transcriptional regulator Regulator
  QMG88_RS09845 (TUMSATVNIG3_19130) - 2115718..2116731 (+) 1014 WP_281826075.1 glycosyltransferase family 4 protein -
  QMG88_RS09850 (TUMSATVNIG3_19140) - 2116915..2118132 (+) 1218 WP_281826077.1 glycosyltransferase family 4 protein -
  QMG88_RS09855 (TUMSATVNIG3_19150) - 2118129..2119250 (+) 1122 WP_281826078.1 hypothetical protein -
  QMG88_RS09860 (TUMSATVNIG3_19160) - 2119718..2120461 (+) 744 WP_281826080.1 acyltransferase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55858.08 Da        Isoelectric Point: 5.6891

>NTDB_id=99370 QMG88_RS09840 WP_281826073.1 2114229..2115734(+) (luxO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MTQPKVLLVEDSTSLAILYKQYVKDEPYDFFHVATGAEAKDFIEKNPPQLVILDLKLPDMHGQDVLAWIRENQISTSVII
ATAHGSVNVAVDLMRIGADDFLEKPINADRLKASIKNHLQRNKLEHLVEDLQSTLDRKRYQGFIGSSLPMQAVYKIIDSV
APPTASVFICGESGTGKEVCAEAIHNQSNRKNKPFIALNCGAIPRDLVESEIFGHMKGAFTGATTDRKGAASQANGGTLF
LDELCEMELDMQKKLLRFLQTGRFTPLGGTKEIQVDCRIICATNRDPLKEVQEGRFREDLYYRVHVVPINLPPLRERGTD
IIDIAKFFLRKYAREDKKKFTGFKRDAELVLCNYDWPGNVRQLQNIIRNIVVLNDEPQVSMEHLPPPLNSMSAGVGSASR
VIKTPVPKPEPVVVSIPEPVHAEAEVAVSAATANFEAPPAPEPVEMGKMPVRPMAEIEREAIQNAIEYCDGNVLNAAVLL
ELSPSTLYRKKQAWETHEEED

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=99370 QMG88_RS09840 WP_281826073.1 2114229..2115734(+) (luxO) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGACTCAACCTAAAGTTCTGCTAGTCGAAGACTCAACGTCACTGGCGATACTCTACAAACAGTATGTAAAAGATGAACC
GTACGATTTTTTCCACGTAGCGACGGGCGCAGAAGCTAAAGACTTTATTGAAAAGAATCCACCTCAGCTCGTGATACTGG
ATTTAAAACTGCCTGATATGCATGGTCAGGATGTGCTTGCCTGGATCCGGGAAAACCAAATATCCACATCTGTCATTATT
GCGACTGCTCACGGTTCAGTGAATGTCGCCGTCGATTTAATGCGAATCGGTGCCGACGATTTTCTGGAAAAACCCATCAA
TGCCGATCGACTCAAAGCCTCCATAAAAAACCACTTGCAGCGCAACAAGCTAGAGCACCTTGTTGAAGACTTGCAATCAA
CGCTGGACAGAAAGCGTTATCAGGGCTTCATCGGTTCCTCTCTGCCTATGCAGGCGGTATACAAGATTATTGATTCGGTT
GCTCCTCCCACCGCCAGTGTCTTTATCTGTGGTGAGAGCGGTACTGGTAAAGAGGTATGTGCAGAAGCCATTCACAACCA
GAGCAATCGTAAAAACAAGCCTTTTATTGCCCTCAACTGCGGGGCGATTCCACGCGATTTGGTAGAAAGCGAAATCTTCG
GTCACATGAAAGGCGCGTTTACTGGTGCGACGACAGACAGAAAAGGCGCGGCCTCTCAGGCAAATGGCGGCACACTGTTT
CTGGATGAGTTGTGTGAGATGGAATTGGATATGCAGAAAAAGCTTCTTCGCTTTCTGCAAACCGGACGTTTCACTCCTCT
TGGTGGCACAAAAGAAATTCAGGTGGACTGCCGGATTATTTGTGCAACCAACCGGGACCCACTAAAAGAAGTTCAGGAAG
GTCGTTTCCGTGAAGACTTGTATTACCGTGTTCACGTCGTCCCTATTAACTTGCCTCCTCTTCGCGAACGCGGAACCGAC
ATTATCGACATAGCCAAATTCTTCCTGCGCAAATATGCCCGTGAAGATAAGAAGAAGTTCACCGGCTTTAAACGCGACGC
TGAGTTGGTTCTATGCAACTACGACTGGCCGGGTAACGTCCGTCAGTTGCAAAACATTATTCGCAACATCGTCGTACTTA
ACGATGAACCTCAAGTGTCAATGGAACACCTACCGCCACCATTGAACAGCATGTCGGCTGGTGTCGGCAGTGCTTCAAGA
GTGATTAAGACACCGGTACCAAAACCTGAGCCAGTGGTTGTGTCCATTCCCGAGCCCGTACACGCTGAAGCGGAAGTCGC
GGTATCTGCGGCAACCGCCAATTTTGAAGCCCCTCCCGCCCCAGAGCCTGTTGAAATGGGCAAGATGCCTGTCAGACCAA
TGGCAGAGATTGAGCGTGAGGCAATTCAGAACGCAATTGAATACTGCGATGGCAATGTACTGAATGCAGCTGTGCTTCTG
GAACTTAGCCCATCCACTCTTTATCGTAAAAAACAGGCATGGGAAACCCATGAAGAAGAGGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.795

97.405

0.485

Multiple sequence alignment