Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAIM57_RS15815 Genome accession   NZ_CP154587
Coordinates   3250613..3251227 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain NFYY361     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245613..3256227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIM57_RS15800 (AAIM57_15800) helD 3245840..3247891 (-) 2052 WP_286527016.1 DNA helicase IV -
  AAIM57_RS15805 (AAIM57_15805) - 3248017..3248463 (+) 447 WP_086503917.1 YccF domain-containing protein -
  AAIM57_RS15810 (AAIM57_15810) yccS 3248482..3250635 (+) 2154 WP_286527018.1 YccS family putative transporter -
  AAIM57_RS15815 (AAIM57_15815) sxy/tfoX 3250613..3251227 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AAIM57_RS15820 (AAIM57_15820) sulA 3251445..3251954 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  AAIM57_RS15825 (AAIM57_15825) ompA 3252312..3253370 (+) 1059 WP_003836839.1 porin OmpA -
  AAIM57_RS15830 (AAIM57_15830) matP 3253461..3253913 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AAIM57_RS15835 (AAIM57_15835) - 3254099..3255859 (+) 1761 WP_257651872.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=993648 AAIM57_RS15815 WP_003035889.1 3250613..3251227(-) (sxy/tfoX) [Citrobacter freundii strain NFYY361]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=993648 AAIM57_RS15815 WP_003035889.1 3250613..3251227(-) (sxy/tfoX) [Citrobacter freundii strain NFYY361]
ATGAAAGAGCTTTCTTATGCACGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment