Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EQB41_RS03080 Genome accession   NZ_LR129840
Coordinates   552485..552751 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547485..557751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS03060 - 547696..548205 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  EQB41_RS03065 pheT 548282..550687 (+) 2406 WP_127820738.1 phenylalanine--tRNA ligase subunit beta -
  EQB41_RS03070 - 550755..551756 (-) 1002 WP_000597968.1 endonuclease/exonuclease/phosphatase family protein -
  EQB41_RS03075 - 551912..552400 (+) 489 Protein_579 transposase -
  EQB41_RS03080 HI0659 552485..552751 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  EQB41_RS03085 metE 553011..555260 (+) 2250 WP_000108270.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EQB41_RS03090 metF 555324..556190 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EQB41_RS12700 - 556372..556641 (-) 270 WP_079218373.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=993637 EQB41_RS03080 WP_001811621.1 552485..552751(+) (HI0659) [Streptococcus pneumoniae strain 4496 isolate 4496]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=993637 EQB41_RS03080 WP_001811621.1 552485..552751(+) (HI0659) [Streptococcus pneumoniae strain 4496 isolate 4496]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534