Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQB41_RS00470 Genome accession   NZ_LR129840
Coordinates   72439..73209 (+) Length   256 a.a.
NCBI ID   WP_000616172.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67439..78209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS00450 - 69448..69885 (+) 438 WP_050209603.1 CoA-binding protein -
  EQB41_RS12135 - 69926..70084 (+) 159 WP_001842139.1 hypothetical protein -
  EQB41_RS00460 - 70113..71123 (-) 1011 WP_127820690.1 YeiH family protein -
  EQB41_RS00465 - 71273..72442 (+) 1170 WP_054377098.1 pyridoxal phosphate-dependent aminotransferase -
  EQB41_RS00470 recO 72439..73209 (+) 771 WP_000616172.1 DNA repair protein RecO Machinery gene
  EQB41_RS00475 plsX 73206..74198 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  EQB41_RS00480 - 74204..74437 (+) 234 WP_000136447.1 acyl carrier protein -
  EQB41_RS00485 - 74474..74773 (+) 300 Protein_90 transposase family protein -
  EQB41_RS00490 blpU 74976..75206 (+) 231 WP_127820691.1 bacteriocin-like peptide BlpU -
  EQB41_RS12560 - 75209..75334 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQB41_RS00495 comA 75919..78072 (+) 2154 WP_000668306.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29778.25 Da        Isoelectric Point: 5.3615

>NTDB_id=993615 EQB41_RS00470 WP_000616172.1 72439..73209(+) (recO) [Streptococcus pneumoniae strain 4496 isolate 4496]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDASLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=993615 EQB41_RS00470 WP_000616172.1 72439..73209(+) (recO) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCTCCAGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTTCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment