Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QMG91_RS23835 Genome accession   NZ_AP027050
Coordinates   1209010..1210182 (+) Length   390 a.a.
NCBI ID   WP_004408985.1    Uniprot ID   A0AAV2VT62
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204010..1215182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG91_RS23815 (TUMSATVNIG2_46510) ylqF 1204231..1205166 (+) 936 WP_022591890.1 ribosome biogenesis GTPase YlqF -
  QMG91_RS23820 (TUMSATVNIG2_46520) - 1205566..1206357 (+) 792 WP_004408980.1 EAL domain-containing protein -
  QMG91_RS23825 (TUMSATVNIG2_46530) - 1206384..1207376 (-) 993 WP_281830551.1 GTP-binding protein -
  QMG91_RS23830 (TUMSATVNIG2_46540) - 1207820..1208800 (+) 981 WP_409351269.1 TDT family transporter -
  QMG91_RS23835 (TUMSATVNIG2_46550) cqsA 1209010..1210182 (+) 1173 WP_004408985.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QMG91_RS23840 (TUMSATVNIG2_46560) - 1210356..1212089 (-) 1734 WP_281830553.1 hybrid sensor histidine kinase/response regulator -
  QMG91_RS23845 (TUMSATVNIG2_46570) - 1212900..1213670 (-) 771 WP_281830555.1 helix-turn-helix transcriptional regulator -
  QMG91_RS23850 (TUMSATVNIG2_46580) - 1213804..1215051 (+) 1248 WP_281830556.1 MFS transporter -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43206.11 Da        Isoelectric Point: 6.1542

>NTDB_id=99357 QMG91_RS23835 WP_004408985.1 1209010..1210182(+) (cqsA) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
MSNLTAKPLPNFIENKLENYLEKNIYSRNNGKHIVQGLLPNDDSIVLRSNDYLAICNHDYIKERQISALTHAKREPIMSA
VFQDQTIEEGSFEQKFADFLGFDHCIITQSGWAANVGLLQTIADENTHIYIDFFAHMSLWHGAQNANSKIHPFLHNRPKN
LLKQIKKYGPGIVVIDSVYSTHGTVAPLKEFVEVANEQGCAIIVDESHSIGTHGPHGAGLLAELGLTDKVDFVTTSLAKT
FSYRAGAILCHHKVHECLPFISLPAIFSSGIIPYEMEALKATLELIKGSDERREDLFNKSHRLIAGLKSLDISTDSDSQI
VAIETGTEENTEKVRDFFELNGIFGAVFCSPATPKNKSVIRLSVNSDVSDSELDKVLTVCSLAKEKGLLQ

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=99357 QMG91_RS23835 WP_004408985.1 1209010..1210182(+) (cqsA) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
ATGAGTAACTTAACAGCTAAACCGCTGCCGAATTTTATTGAGAATAAACTTGAGAACTACCTCGAGAAGAACATTTACTC
ACGAAATAACGGCAAACACATCGTCCAGGGCTTGCTGCCAAACGATGATTCGATAGTACTTCGTAGTAACGACTACTTGG
CAATCTGTAATCACGATTACATTAAGGAGAGACAAATCAGTGCGCTTACCCATGCTAAGCGCGAGCCGATCATGTCGGCG
GTATTTCAGGACCAAACCATCGAAGAAGGTTCTTTCGAGCAGAAATTTGCTGATTTTCTAGGCTTTGACCACTGTATTAT
CACTCAGTCAGGCTGGGCGGCAAACGTAGGGCTTCTTCAGACCATCGCCGATGAAAACACCCATATTTACATCGACTTTT
TCGCTCATATGTCCTTGTGGCATGGTGCACAAAACGCGAACAGTAAGATCCACCCCTTCCTACACAATCGTCCTAAGAAC
TTACTGAAGCAGATAAAGAAATACGGACCCGGTATTGTGGTTATCGACTCGGTATACAGTACTCACGGAACGGTCGCACC
ATTGAAAGAGTTTGTCGAAGTCGCAAATGAACAAGGCTGCGCGATCATTGTCGACGAATCTCATTCGATTGGTACACACG
GACCACACGGAGCCGGTTTGCTGGCTGAGTTAGGGTTAACGGATAAAGTTGATTTTGTTACCACCAGCCTGGCAAAAACG
TTTTCTTACCGAGCTGGCGCTATTTTGTGCCATCACAAAGTGCACGAATGTCTGCCCTTTATATCACTTCCTGCCATCTT
CAGTTCGGGCATCATTCCTTACGAAATGGAGGCACTCAAAGCAACGCTGGAATTGATTAAGGGAAGCGACGAAAGACGCG
AGGATTTATTCAATAAATCTCATAGACTGATTGCCGGTTTGAAGTCTTTAGATATCAGTACAGACAGCGACTCTCAGATT
GTTGCTATAGAAACGGGAACAGAGGAAAACACAGAAAAGGTCAGAGACTTTTTCGAACTTAATGGCATTTTCGGTGCGGT
TTTTTGTAGCCCGGCAACGCCAAAAAATAAGAGTGTTATTCGCCTGTCTGTAAATAGCGATGTCAGTGATTCTGAGTTAG
ACAAAGTGCTTACTGTGTGTAGCTTGGCGAAAGAAAAAGGACTCTTACAATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.974

97.949

0.538

Multiple sequence alignment