Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAHT65_RS21045 Genome accession   NZ_CP154443
Coordinates   4160869..4161615 (-) Length   248 a.a.
NCBI ID   WP_343310770.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4155869..4166615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS21020 (AAHT65_21015) mreC 4156265..4157137 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  AAHT65_RS21025 (AAHT65_21020) mreB 4157168..4158181 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  AAHT65_RS21030 (AAHT65_21025) radC 4158273..4158968 (-) 696 WP_003325238.1 DNA repair protein RadC -
  AAHT65_RS21035 (AAHT65_21030) - 4159003..4159572 (-) 570 WP_010789377.1 nucleoside triphosphate pyrophosphatase -
  AAHT65_RS21040 (AAHT65_21035) - 4159719..4160735 (-) 1017 WP_343310769.1 SPOR domain-containing protein -
  AAHT65_RS21045 (AAHT65_21040) comC 4160869..4161615 (-) 747 WP_343310770.1 prepilin peptidase Machinery gene
  AAHT65_RS21050 (AAHT65_21045) - 4161769..4163064 (-) 1296 WP_343310771.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AAHT65_RS21055 (AAHT65_21050) valS 4163122..4165764 (-) 2643 WP_315915539.1 valine--tRNA ligase -
  AAHT65_RS21060 (AAHT65_21055) - 4166211..4166402 (+) 192 WP_010789382.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26879.64 Da        Isoelectric Point: 8.9511

>NTDB_id=993474 AAHT65_RS21045 WP_343310770.1 4160869..4161615(-) (comC) [Bacillus atrophaeus strain SW]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKPRSFCSFCRHPLSYAELIPVFSFFLQKGRCKCCSQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLMFFLPFLIAGRMIVPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFVLAVFIGMLYGACGTLSGKLDRKQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAIY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=993474 AAHT65_RS21045 WP_343310770.1 4160869..4161615(-) (comC) [Bacillus atrophaeus strain SW]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACCGCGCTCCTTCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCCGATGTAAATGCTGTTCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCATTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATGTTTTTTCTTCCTTTTTTGATAGCAG
GAAGAATGATTGTACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGCTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGTTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTGTCCTTGCTGTCTTTATAGGTATGCTGTACGGCGCATGCGGCACGCTGTCAGGAAAGCTCGATC
GAAAACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTAAGTTATTTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATATACTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

61.538

99.597

0.613

Multiple sequence alignment