Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAHT65_RS20045 Genome accession   NZ_CP154443
Coordinates   3983569..3984336 (-) Length   255 a.a.
NCBI ID   WP_216413438.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3978569..3989336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS20025 (AAHT65_20020) - 3978727..3979539 (-) 813 WP_004429498.1 pyruvate, water dikinase regulatory protein -
  AAHT65_RS20030 (AAHT65_20025) ccpN 3979565..3980203 (-) 639 WP_034718267.1 transcriptional regulator CcpN -
  AAHT65_RS20035 (AAHT65_20030) glyS 3980351..3982390 (-) 2040 WP_343310714.1 glycine--tRNA ligase subunit beta -
  AAHT65_RS20040 (AAHT65_20035) glyQ 3982383..3983270 (-) 888 WP_010789234.1 glycine--tRNA ligase subunit alpha -
  AAHT65_RS20045 (AAHT65_20040) recO 3983569..3984336 (-) 768 WP_216413438.1 DNA repair protein RecO Machinery gene
  AAHT65_RS20050 (AAHT65_20045) - 3984373..3984516 (-) 144 WP_004429487.1 YqzL family protein -
  AAHT65_RS20055 (AAHT65_20050) era 3984673..3985578 (-) 906 WP_004429485.1 GTPase Era -
  AAHT65_RS20060 (AAHT65_20055) - 3985559..3985969 (-) 411 WP_010789236.1 cytidine deaminase -
  AAHT65_RS20065 (AAHT65_20060) - 3986083..3986460 (-) 378 WP_004429481.1 diacylglycerol kinase family protein -
  AAHT65_RS20070 (AAHT65_20065) ybeY 3986441..3986914 (-) 474 WP_010789237.1 rRNA maturation RNase YbeY -
  AAHT65_RS20075 (AAHT65_20070) - 3986915..3989050 (-) 2136 WP_343310716.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29180.85 Da        Isoelectric Point: 8.5598

>NTDB_id=993466 AAHT65_RS20045 WP_216413438.1 3983569..3984336(-) (recO) [Bacillus atrophaeus strain SW]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKTNSRLSAVSQPFLYGSFLIQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFELILESLKRLNEGTDPDVITFIIQMKMLGVIGLYPELNHCVHCQSQDG
TFHFSVRDNGFICHRCFGKDPYKVPITPQTARLLRLFYYFDLSRLGNVSIKQETKDELKRVIDLYYEEYSGIYLKSKRFL
DQMESMKNLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=993466 AAHT65_RS20045 WP_216413438.1 3983569..3984336(-) (recO) [Bacillus atrophaeus strain SW]
ATGCTGACAAAATGTGAAGGAATTGTCCTTCGTACCAATGACTACGGCGAAACAAATAAGATTGTGACCCTGCTGACAAG
GGAGCACGGCAAAATCGGCGTAATGGCAAGAGGCGCCAAAAAAACCAACAGCCGTTTATCAGCCGTCAGCCAGCCTTTTC
TGTATGGATCGTTTTTAATTCAAAAAACGTCAGGTCTCGGGACGCTTCAGCAGGGTGAAATGATTCTCAGTATGAGAGGC
ATTAGAGAAGATTTGTTTTTGACAGCTTATGCTGCTTTTATTGCAGAACTTGTTGATAAGGGGACGGAGGAAAAGAAGCC
GAACCCGTATTTGTTTGAATTGATTCTTGAGTCTTTGAAGAGGCTTAATGAAGGAACCGACCCCGATGTCATTACCTTCA
TCATTCAAATGAAAATGCTGGGTGTAATAGGATTGTATCCTGAACTCAACCACTGTGTGCATTGTCAAAGTCAGGATGGA
ACGTTTCATTTTTCTGTCAGGGATAACGGATTTATCTGTCATCGCTGCTTTGGCAAGGACCCTTACAAAGTGCCGATTAC
GCCGCAAACGGCCAGGCTTTTGAGACTGTTTTATTACTTTGATCTTTCTAGACTCGGCAATGTATCCATAAAGCAGGAAA
CAAAAGATGAGCTAAAACGGGTCATTGACTTGTATTACGAAGAATATTCCGGAATTTATCTTAAATCAAAACGTTTTTTA
GACCAAATGGAGAGTATGAAAAATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

92.157

100

0.922

Multiple sequence alignment