Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAHT65_RS19530 Genome accession   NZ_CP154443
Coordinates   3895434..3897164 (-) Length   576 a.a.
NCBI ID   WP_088117554.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3890434..3902164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS19510 (AAHT65_19505) - 3890570..3891688 (+) 1119 WP_088117553.1 NADH-dependent flavin oxidoreductase -
  AAHT65_RS19515 (AAHT65_19510) - 3891853..3892710 (+) 858 WP_003325485.1 manganese catalase family protein -
  AAHT65_RS19520 (AAHT65_19515) spo0A 3892878..3893675 (-) 798 WP_010789174.1 sporulation transcription factor Spo0A Regulator
  AAHT65_RS19525 (AAHT65_19520) spoIVB 3893958..3895238 (-) 1281 WP_003325483.1 SpoIVB peptidase -
  AAHT65_RS19530 (AAHT65_19525) recN 3895434..3897164 (-) 1731 WP_088117554.1 DNA repair protein RecN Machinery gene
  AAHT65_RS19535 (AAHT65_19530) argR 3897200..3897649 (-) 450 WP_003325480.1 arginine repressor ArgR -
  AAHT65_RS19540 (AAHT65_19535) - 3897748..3898593 (-) 846 WP_106360549.1 TlyA family RNA methyltransferase -
  AAHT65_RS19545 (AAHT65_19540) dxs 3898590..3900491 (-) 1902 WP_003325478.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAHT65_RS19550 (AAHT65_19545) - 3900698..3901588 (-) 891 WP_010789177.1 polyprenyl synthetase family protein -
  AAHT65_RS19555 (AAHT65_19550) - 3901578..3901832 (-) 255 WP_003325476.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64445.18 Da        Isoelectric Point: 4.7139

>NTDB_id=993457 AAHT65_RS19530 WP_088117554.1 3895434..3897164(-) (recN) [Bacillus atrophaeus strain SW]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFEVC
HEQGIDVSDDMIVLRRDINSSGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLQLLDKFAGEEADSALH
AYREGYQRYMKVLKKLRQLSESEQEMAHRLDLIQFQLDEIESAGLELNEDDILQEERLQISNFEKIYEALQNAYNALRNE
QGGLDWVGMASSQLDDISDINEPLQKLSESVSNSYYLLEDSTFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIQNRDSHLQTLKQELDSVGKDVAVEAANVSKIRKAWAKKLAVQIQQELKSLYMEKSTFDTEFLI
RTASRNEEAPIVNGQPVQLTDQGIDIVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLLIAKESKDGRTTTHVTPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQANQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=993457 AAHT65_RS19530 WP_088117554.1 3895434..3897164(-) (recN) [Bacillus atrophaeus strain SW]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAAGAATTGACGGTTTCTTTTGAACGGGGGCTGACTGTATT
AACGGGAGAAACCGGTGCCGGTAAATCCATTATTATTGATGCCATTTCTCTTCTTGTCGGAGGCCGTGGATCGTCTGAAT
TTGTCAGGTACGGCGAAACAAAAGCTGAACTTGAAGGGCTGTTTCTTTTAGAAAGCGGACATCCTGTTTTTGAGGTGTGC
CATGAACAGGGGATTGATGTATCAGATGATATGATTGTGTTGAGGCGTGATATAAATTCCAGCGGAAAAAGCGTGTGCCG
CGTCAATGGTAAGCTTGTTACAATTGCAGCGCTAAGGGAAATCGGCAGGCTCTTATTAGATATCCACGGGCAGCACGATA
ATCAGCTGCTGATGGAAGACGATAAGCATCTTCAGTTGTTGGACAAGTTTGCCGGAGAAGAAGCTGACAGCGCGCTCCAT
GCTTATCGGGAAGGTTATCAGCGTTACATGAAGGTACTGAAAAAACTTAGGCAGCTGTCTGAAAGCGAGCAGGAAATGGC
CCACCGGCTGGATTTGATTCAATTCCAGCTGGATGAAATTGAATCAGCGGGTCTGGAACTGAATGAAGACGATATTCTGC
AAGAGGAACGCCTGCAAATTTCAAACTTCGAAAAGATTTATGAGGCGCTGCAAAATGCTTATAACGCGCTTCGAAATGAG
CAGGGCGGATTGGACTGGGTCGGCATGGCGTCAAGCCAGCTTGACGATATATCCGACATCAATGAACCGCTGCAAAAACT
TTCTGAAAGTGTCTCTAACTCCTATTATCTGCTTGAAGATTCTACATTTCAAATGAGAAACATGCTGGATGAGCTTGAGT
ACGATCCGGAGCGTTTGAATTTTATTGAAACCCGCTTAAATGAGATCAAGCAGCTGAAACGTAAATACGGCGCTACTGTA
GAAGACATTTTGGAATACGCTTCAAAAATTGAAGAAGAGATTGACCAAATCCAAAACAGAGACAGCCACCTTCAAACGCT
TAAGCAGGAGCTGGATTCTGTCGGTAAAGATGTGGCGGTAGAAGCGGCAAACGTCTCAAAAATCAGAAAAGCGTGGGCGA
AAAAGCTGGCTGTTCAAATTCAGCAGGAGCTGAAAAGCCTTTATATGGAGAAGTCAACATTTGATACAGAATTTCTTATC
AGGACGGCATCGCGCAATGAAGAAGCTCCGATTGTAAACGGACAGCCGGTCCAACTGACTGATCAAGGAATAGATATAGT
GAAGTTTCTGATCTCGACCAATACGGGCGAACCGCTAAAACCGCTTTCTAAAGTAGCATCTGGCGGAGAGTTGTCGAGGG
TGATGCTTGCGTTGAAAAGCATCTTTTCCTCACAGCAGGATGTAACGTCAATCATCTTTGACGAAGTCGATACAGGAGTC
AGCGGAAGAGTCGCTCAGGCGATCGCCGAAAAGATTCATAAGGTGTCAATGGGATCACAAGTGCTTTGCATCACCCATCT
GCCTCAGGTCGCCGCTATGGCGGATACCCATCTTTTAATTGCCAAAGAATCAAAAGACGGAAGAACAACAACTCATGTCA
CTCCGCTGTCAAAGCAGGAAAAGGTGGCGGAAATCGGCCGGATGATTGCCGGAGTCGAAGTGACCGATCTGACCAAACGG
CATGCGAAGGAACTTTTAAAACAAGCCAATCAGGTGAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

90.278

100

0.903

Multiple sequence alignment