Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAHT65_RS18465 Genome accession   NZ_CP154443
Coordinates   3701736..3702344 (+) Length   202 a.a.
NCBI ID   WP_010789030.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3696736..3707344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS18425 (AAHT65_18420) - 3697842..3698348 (-) 507 WP_003325657.1 PTS glucose transporter subunit IIA -
  AAHT65_RS18430 (AAHT65_18425) - 3698498..3698917 (+) 420 WP_343310653.1 Hsp20/alpha crystallin family protein -
  AAHT65_RS18435 (AAHT65_18430) - 3698937..3699326 (-) 390 WP_094232263.1 YppG family protein -
  AAHT65_RS18440 (AAHT65_18435) - 3699516..3699704 (+) 189 WP_035175493.1 YppF family protein -
  AAHT65_RS18445 (AAHT65_18440) - 3699738..3700112 (-) 375 WP_003325652.1 YppE family protein -
  AAHT65_RS18450 (AAHT65_18445) - 3700154..3700399 (-) 246 WP_003325651.1 DUF5446 family protein -
  AAHT65_RS18455 (AAHT65_18450) sspM 3700600..3700704 (+) 105 WP_003325650.1 acid-soluble spore protein SspM -
  AAHT65_RS18460 (AAHT65_18455) - 3700731..3701693 (-) 963 WP_315915067.1 DUF2515 domain-containing protein -
  AAHT65_RS18465 (AAHT65_18460) recU 3701736..3702344 (+) 609 WP_010789030.1 Holliday junction resolvase RecU Machinery gene
  AAHT65_RS18470 (AAHT65_18465) - 3702382..3705135 (+) 2754 WP_343310654.1 PBP1A family penicillin-binding protein -
  AAHT65_RS18475 (AAHT65_18470) - 3705227..3705718 (-) 492 WP_343310655.1 YpoC family protein -
  AAHT65_RS18480 (AAHT65_18475) nth 3705715..3706374 (-) 660 WP_343310656.1 endonuclease III -
  AAHT65_RS18485 (AAHT65_18480) dnaD 3706393..3707091 (-) 699 WP_035175190.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23625.92 Da        Isoelectric Point: 9.8392

>NTDB_id=993455 AAHT65_RS18465 WP_010789030.1 3701736..3702344(+) (recU) [Bacillus atrophaeus strain SW]
MIRYPNGKTFQPKKTVSSQNRQKKPLSYSNRGMTLEDDLNETNKYYLAKQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGLYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEAEKLFYFWERKE
KNGRKSIRKDELNEAAFPISLGYSPRIDYISIIEQLYFSPNP

Nucleotide


Download         Length: 609 bp        

>NTDB_id=993455 AAHT65_RS18465 WP_010789030.1 3701736..3702344(+) (recU) [Bacillus atrophaeus strain SW]
GTGATTCGGTATCCCAACGGAAAAACGTTTCAGCCGAAAAAAACGGTTTCATCCCAAAATAGGCAAAAAAAGCCGCTATC
ATACAGTAATCGCGGCATGACCCTCGAAGATGACTTAAATGAAACGAATAAGTATTATCTAGCAAAGCAAATTGCCGTGA
TTCACAAAAAACCGACGCCCGTGCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCAGCTGTCATCAAAGAAGCCTAT
TTTAAGCAGTCATCAACAACTGACTATAATGGACTTTACAAAGGCCGGTATATTGATTTTGAAGCAAAGGAAACGAAAAA
TACAACCTCCTTCCCTTTGCAAAACTTTCATGATCACCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGAATTT
GTTTTGTTATTATATCCGCTTTCGGCCAAGTTTATTTTTTAGAGGCTGAAAAGCTGTTTTACTTCTGGGAAAGAAAAGAA
AAGAACGGCAGAAAGTCGATTCGGAAAGACGAATTAAATGAAGCCGCTTTTCCAATTTCACTTGGATACTCGCCAAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCAAACCCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.547

99.505

0.901

Multiple sequence alignment