Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAHT65_RS13340 Genome accession   NZ_CP154443
Coordinates   2636613..2637038 (+) Length   141 a.a.
NCBI ID   WP_081250945.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2631613..2642038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS13315 (AAHT65_13315) - 2632776..2632979 (+) 204 WP_343310352.1 hypothetical protein -
  AAHT65_RS13320 (AAHT65_13320) - 2633955..2634089 (+) 135 Protein_2537 ArpU family transcriptional regulator -
  AAHT65_RS13325 (AAHT65_13325) - 2634803..2635084 (-) 282 WP_343310353.1 LCI family antimicrobial peptide -
  AAHT65_RS13330 (AAHT65_13330) - 2635756..2636085 (-) 330 WP_343310354.1 hypothetical protein -
  AAHT65_RS13335 (AAHT65_13335) - 2636144..2636422 (-) 279 WP_003327515.1 hypothetical protein -
  AAHT65_RS13340 (AAHT65_13340) nucA/comI 2636613..2637038 (+) 426 WP_081250945.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAHT65_RS13345 (AAHT65_13345) - 2637187..2637849 (+) 663 WP_003327513.1 MgtC/SapB family protein -
  AAHT65_RS13350 (AAHT65_13350) - 2637908..2638141 (-) 234 WP_343310355.1 hypothetical protein -
  AAHT65_RS13355 (AAHT65_13355) - 2638354..2638566 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAHT65_RS13360 (AAHT65_13360) - 2638626..2638841 (-) 216 WP_343310356.1 hypothetical protein -
  AAHT65_RS13365 (AAHT65_13365) - 2639155..2640555 (+) 1401 WP_315916759.1 polysaccharide deacetylase family protein -
  AAHT65_RS13370 (AAHT65_13370) - 2640608..2641081 (-) 474 WP_063637839.1 YjfA family protein -
  AAHT65_RS13375 (AAHT65_13375) - 2641218..2641628 (-) 411 WP_106034568.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15458.32 Da        Isoelectric Point: 4.7462

>NTDB_id=993444 AAHT65_RS13340 WP_081250945.1 2636613..2637038(+) (nucA/comI) [Bacillus atrophaeus strain SW]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAIAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=993444 AAHT65_RS13340 WP_081250945.1 2636613..2637038(+) (nucA/comI) [Bacillus atrophaeus strain SW]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGCTATCCTGAAACCGGCGATCACATTA
AAGATGCGATAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.524

89.362

0.532

Multiple sequence alignment