Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | AAHT65_RS06710 | Genome accession | NZ_CP154443 |
| Coordinates | 1302938..1303228 (-) | Length | 96 a.a. |
| NCBI ID | WP_088116342.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain SW | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1297938..1308228
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAHT65_RS06670 (AAHT65_06670) | darA | 1297956..1298285 (+) | 330 | WP_003328606.1 | cyclic di-AMP receptor DarA | - |
| AAHT65_RS06675 (AAHT65_06675) | - | 1298298..1298738 (+) | 441 | WP_003328605.1 | YaaR family protein | - |
| AAHT65_RS06680 (AAHT65_06680) | holB | 1298750..1299739 (+) | 990 | WP_010787388.1 | DNA polymerase III subunit delta' | - |
| AAHT65_RS06685 (AAHT65_06685) | ricT | 1299742..1300569 (+) | 828 | WP_061571110.1 | competence/sporulation regulator complex protein RicT | - |
| AAHT65_RS06690 (AAHT65_06690) | yabA | 1300584..1300943 (+) | 360 | WP_003328601.1 | replication initiation-control protein YabA | - |
| AAHT65_RS06695 (AAHT65_06695) | - | 1301004..1301747 (+) | 744 | WP_106273530.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| AAHT65_RS06700 (AAHT65_06700) | - | 1301734..1302033 (+) | 300 | WP_063639019.1 | GIY-YIG nuclease family protein | - |
| AAHT65_RS06705 (AAHT65_06705) | rsmI | 1302008..1302886 (+) | 879 | WP_010787389.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| AAHT65_RS06710 (AAHT65_06710) | abrB | 1302938..1303228 (-) | 291 | WP_088116342.1 | transition state genes transcriptional regulator AbrB | Regulator |
| AAHT65_RS06715 (AAHT65_06715) | metG | 1303715..1305709 (+) | 1995 | WP_003328595.1 | methionine--tRNA ligase | - |
| AAHT65_RS06720 (AAHT65_06720) | - | 1305788..1306555 (+) | 768 | WP_010787391.1 | TatD family hydrolase | - |
| AAHT65_RS06725 (AAHT65_06725) | - | 1306713..1308038 (+) | 1326 | WP_343311200.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10858.67 Da Isoelectric Point: 6.3482
>NTDB_id=993419 AAHT65_RS06710 WP_088116342.1 1302938..1303228(-) (abrB) [Bacillus atrophaeus strain SW]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSQEG
AEQIIKEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=993419 AAHT65_RS06710 WP_088116342.1 1302938..1303228(-) (abrB) [Bacillus atrophaeus strain SW]
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
ATGTTTATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTAGGACGTGTAGTTATTCCTATCGAACTGCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAGCCTAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCAAACGGTAAATTGGTTCTTAGCCAAGAAGGC
GCTGAGCAAATCATTAAAGAAATCCAAAACCAGCTTCAAAGCCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
94.792 |
100 |
0.948 |