Detailed information NTG0993417

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AAHT65_RS06485
• Genome accession: NZ_CP154443
• Coordinates: 1261425..1262537 (+)
• Length: 370 a.a.
• NCBI ID: WP_010790564.1
• Uniprot ID: -
• Organism: Bacillus atrophaeus strain SW
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1256425..1267537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHT65_RS06460 (AAHT65_06460)	rnpA	1257125..1257472 (-)	348	WP_003326040.1	ribonuclease P protein component	-
AAHT65_RS06465 (AAHT65_06465)	rpmH	1257632..1257766 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
AAHT65_RS06470 (AAHT65_06470)	dnaA	1258397..1259737 (+)	1341	WP_003326038.1	chromosomal replication initiator protein DnaA	-
AAHT65_RS06475 (AAHT65_06475)	dnaN	1259921..1261057 (+)	1137	WP_010790563.1	DNA polymerase III subunit beta	-
AAHT65_RS06480 (AAHT65_06480)	rlbA	1261194..1261409 (+)	216	WP_003326035.1	ribosome maturation protein RlbA	-
AAHT65_RS06485 (AAHT65_06485)	recF	1261425..1262537 (+)	1113	WP_010790564.1	DNA replication/repair protein RecF	Machinery gene
AAHT65_RS06490 (AAHT65_06490)	-	1262555..1262800 (+)	246	WP_003326032.1	extracellular matrix regulator RemB	-
AAHT65_RS06495 (AAHT65_06495)	gyrB	1262857..1264773 (+)	1917	WP_258729873.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
AAHT65_RS06500 (AAHT65_06500)	gyrA	1265000..1267465 (+)	2466	WP_343311189.1	DNA topoisomerase (ATP-hydrolyzing) subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42454.47 Da
• Isoelectric Point: 7.6570

>NTDB_id=993417 AAHT65_RS06485 WP_010790564.1 1261425..1262537(+) (recF) [Bacillus atrophaeus strain SW]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGS
IPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQR
NHFLKQLQSRKQTDQTMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDLSKI
GDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVQNGALVK

Nucleotide

• Length: 1113 bp

>NTDB_id=993417 AAHT65_RS06485 WP_010790564.1 1261425..1262537(+) (recF) [Bacillus atrophaeus strain SW]
TTGTATATCCAAAATTTGGAATTAACGTCTTATCGTAATTACGAGCGTGCTGAACTTCAATTTGAAAATAAAGTGAATGT
CATCATCGGTGAGAACGCTCAAGGGAAGACAAATCTCATGGAAGCGATCTATGTTTTGTCGATGGCGAAATCACATCGCA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGTCG
ATCCCGATGCAGCTTGTCATTTCCAAGAAGGGGAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAACTGAGCCGGTA
TGTAGGAGCGCTGAATACAATTATGTTCGCGCCCGAGGACTTAAATCTCGTAAAGGGCAGCCCGCAAGTAAGACGGCGGT
TTCTTGACATGGAAATCGGCCAGGTATCTCCAGTCTATTTGTACGATCTTTCTCTGTACCAGAAAATTCTTACGCAAAGA
AATCATTTTTTGAAACAGCTGCAAAGCAGGAAACAGACTGACCAGACAATGCTCGACGTTCTGACTGAACAGCTGATCGA
GACTGCTGCAAAGGTTGTCGTAAAACGCCTGCAATTTACAGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGAA
TTTCAAGAGGGCTTGAAGAACTGACGCTGAAGTATCAGACGGCTCTTGAGGTATCAGATCCCGAAGACTTGTCGAAAATA
GGAGATAGTTACCAAAGGGCGTTTTCAAAGCTAAGAGAAAAAGAAATTGAGCGTGGTGTAACGCTGTCAGGACCTCATCG
GGATGATGTTCTTTTTTATGTGAACGGACGCGATGTGCAAACATATGGTTCTCAGGGGCAGCAGCGGACAACGGCATTGT
CACTCAAGCTGGCGGAAATTGACTTAATTCATGAAGAAATCGGAGAATACCCTATCTTACTTTTGGATGATGTGCTGAGT
GAGCTGGATGACTATCGGCAGTCGCATTTGCTTCATACGATCCAAGGCCGTGTTCAAACGTTTGTCACTACGACAAGTGT
AGATGGCATTGATCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	95.405	100	0.954